Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2707 ATGGATCCCTCATCTTCCATGTCGCTGCCGCCAGCTCTGCACCTCGCAATGGCGGCCTTGCTTGGAGCTTCTTTCATGGCCATATCCGCCTTCTATATCCACCGCCGCACCGTCGACCACGTCCTGCACCGCCTCGTTGAAATCCGTCGCGCGCCGCCCTCCGCCTCTGAAGAAGACGGCGCCGATGACGACGACGAACGGAGCGGGTTCGGCCCAGACGGCGGGGAAACGGACACCGATACTGACGTGAGAAACTTGTCGAGGTCCGTGGACGAGAACCTGAACTTGCTTCGAAGCTATAGGATTTCCTCTTCCATGCCGAACGTGGCTTCACTTGCTGATTGGTTCCGGGAGGACCCTAGGAACCGTGCTTCGTCGCTAGATAACTTCCAATCCGTTCCGTTAGGGCTTCCGTCTGCGACGAATGGAGAGAATGCTCATATTTCGTGTTCTTATAAGAGAATTGCGTCTGTTGGTAGAATTAAGACCCCGAGATCACCGGGGCGTAATACGTTTGAAAGTGTTGAGGATTCTGATGAAGAGGGAACTCAGTTTGGTGATGACAGTCGCATTCCTTTCTATCCTGTGACTAGAGACGGACCAAATTCAAGCATATGCAATTTGCCTGCCATTCCATTCAGAGTTGATGATTCAAACACTGCAAAAAACCAGATTTGTGGAGAGGTTTCAAAAGAAGCAAAAAGGGGTGCAGATGTGAATGAAGGGGGAATCGCTAATTCAACTTCCGTAGCTGGGAATGACCTGCTGTTTGTCAATAATGTCTTGCAAGCAAGGGGCACTACCCTTGAGCCGGCAAATATCGAAGAAGAAGAAGTATGCAAGATGATTAGGGAATGCTTAGATTTGCGTAAGAAATATGTTTACAAGGAAAATATTGTTCCTTGGAAGACTGAACCTGTTGCAACTAACTCTGATCCGTTTCATTTTGAACCAGTTGAAGCAACAACACACCATTTTAGGATGGAAGATGGAGTCGTACATGTTTTTGCAAGTAAAACTGACCCTGAAGAGCTCTTCCCTGTTGCAAGCTCAACGGCATTTTTTACTGATATGCATTACATTCTTAAAGTCATGTCTATTGGGAATGTTCGATCTGCATGCTACCACAGACTGCGATTTCTGGAGGAAAAATTCCGCCTTCATCTGTTACTAAATGCAGATAGGGAGTTTCTGGCTCAGAAAGGTGCACCACACCGCGATTTTTACAATATCAGGAAAGTTGATACTCATATTCACCATTCTGCTTGCATGAATCAGAAGCATCTCGTCCGCTTCATCAAATCAAAATTAAGAAAAGAACCGGATGAGGTTGTAATATTTAGAGATGGAAAGTATATGACACTTAAGGAGGTGTTTGAGAGTTTGGATTTGACCGGATATGATCTGAATGTTGATTTGTTGGACGTCCATGCAGATAAGAGCACATTTCATAGATTTGATAAATTCAACCTAAAGTACAATCCTTGTGGGCAGAGCAGACTCAGAGAGATATTTTTAAAGCAAGATAATCTTATCCAGGGAAGGTTTCTGGCTGAAGTAACGAAGCAAGTTTTGTCAGATCTTGAAGCAAGCAAGTATCAGATGGCTGAGTACAGGATCTCTGTTTATGGAAGAAAAATGAGTGAATGGGATCAGCTGGCTAGTTGGTTTGTTAACAATGCTCTTTATAGTAAGAATGCTGTATGGCTAATCCAGTTACCACGGCTATACAATGTGTACAAGAATATGGGAATTGTTAACTCCTTTCAGAATATTCTGGATAATGTGTTTATTCCTCTATTTGAAGCCACAGTAGATCCAAATTCTCATCCTCAATTACATTTATTCTTGATGCAGGTGGTGGGATTTGATCTTGTAGATGATGAGAGCAAACCAGAAAGGCGTCCAACTAAGCACATGCCTACACCAGCTGAGTGGACAAATGAATTCAATCCAGCTTACTCTTATTACATCTATTACTGCTATGCAAACTTGTATACGCTTAATAAGCTGCGCGAGTCTAAAGGAATGACAACAATAAAATTGCGGCCGCATTGTGGAGAGGCTGGCGATAGTGATCATTTGGCTGCTGGCTTCCTCCTGTGCCATAACATTTCTCATGGGATTAATCTACGGAAAACTCCTGTTTTGCAGTATTTATATTACCTTGCGCAGGTTGGGTTAGCTATGTCACCCCTTAGCAATAATTCCCTTTTCTTGGATTATCATCGCAACCCACTGCCCATGTTTTTCCAGCGAGGTCTTAACGTCTCTCTCTCTACGGATGATCCTTTGCAAATTCATTTGACAAAAGAGCCACTGCTGGAAGAATATAGTGTTGCAGCAAAGGTATGGAAACTTTCTTCTTGTGATCTATGTGAGATAGCCAGAAATTCTGTATACCAATCTGGATTCTCACATCCAGCCAAGTTACACTGGCTTGGCGATAAATATTTCTTGAGTGGTTCTGAAGGAAATGATATTCATAAGACAAATGTACCCGATTTGAGGGTCTCTTTCCGATACGAGACATGGAAGGAGGAAATGCAATATATTTACGCTGGTCAAGCCAACTTTCCTGAAGATGTAGATCCATGA 2598 0.4361 MDPSSSMSLPPALHLAMAALLGASFMAISAFYIHRRTVDHVLHRLVEIRRAPPSASEEDGADDDDERSGFGPDGGETDTDTDVRNLSRSVDENLNLLRSYRISSSMPNVASLADWFREDPRNRASSLDNFQSVPLGLPSATNGENAHISCSYKRIASVGRIKTPRSPGRNTFESVEDSDEEGTQFGDDSRIPFYPVTRDGPNSSICNLPAIPFRVDDSNTAKNQICGEVSKEAKRGADVNEGGIANSTSVAGNDLLFVNNVLQARGTTLEPANIEEEEVCKMIRECLDLRKKYVYKENIVPWKTEPVATNSDPFHFEPVEATTHHFRMEDGVVHVFASKTDPEELFPVASSTAFFTDMHYILKVMSIGNVRSACYHRLRFLEEKFRLHLLLNADREFLAQKGAPHRDFYNIRKVDTHIHHSACMNQKHLVRFIKSKLRKEPDEVVIFRDGKYMTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLAEVTKQVLSDLEASKYQMAEYRISVYGRKMSEWDQLASWFVNNALYSKNAVWLIQLPRLYNVYKNMGIVNSFQNILDNVFIPLFEATVDPNSHPQLHLFLMQVVGFDLVDDESKPERRPTKHMPTPAEWTNEFNPAYSYYIYYCYANLYTLNKLRESKGMTTIKLRPHCGEAGDSDHLAAGFLLCHNISHGINLRKTPVLQYLYYLAQVGLAMSPLSNNSLFLDYHRNPLPMFFQRGLNVSLSTDDPLQIHLTKEPLLEEYSVAAKVWKLSSCDLCEIARNSVYQSGFSHPAKLHWLGDKYFLSGSEGNDIHKTNVPDLRVSFRYETWKEEMQYIYAGQANFPEDVDP* 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2707 865 CDD AMPD 354 849 IPR006329 GO:0003876|GO:0032264
Lja4g2707 865 PANTHER AMP DEAMINASE 12 864 IPR006329 GO:0003876|GO:0032264
Lja4g2707 865 MobiDBLite consensus disorder prediction 161 190 - -
Lja4g2707 865 MobiDBLite consensus disorder prediction 67 86 - -
Lja4g2707 865 TIGRFAM AMP_deaminase: AMP deaminase 322 852 IPR006329 GO:0003876|GO:0032264
Lja4g2707 865 SUPERFAMILY Metallo-dependent hydrolases 267 853 IPR032466 -
Lja4g2707 865 MobiDBLite consensus disorder prediction 52 86 - -
Lja4g2707 865 Gene3D - 324 848 - -
Lja4g2707 865 ProSitePatterns Adenosine and AMP deaminase signature. 758 764 IPR006650 GO:0009168|GO:0019239
Lja4g2707 865 PANTHER AMP DEAMINASE 12 864 - -
Lja4g2707 865 Pfam AMP deaminase 295 852 IPR006329 GO:0003876|GO:0032264
Lja4g2707 865 Gene3D - 424 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2707 Lja-Chr4 40188756 40201189 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2707 K01490 - gmx:100793831 1461.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2707 4 40188756 40201189 Lja4g2707 4 40188756 40201189 ECH