Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2671 ATGCCTCATCACAGTGAGAAAGACCCATCATCATCACCGCAACCACCTTCACGTGCCATTCTAGACACAGTACAAGAAATCACCACCATCTACCGTTCACTGCCACCTCGACCTTCCGTACAAGAGTTGGAAGCAGCCACGTCAACGGTGGACACCGTGAACAACGTGGAGCAAACCAAACTGCATGAAATTTCTGTGCAGAAACCACCCCACGATGTCCCTCAGGAACTTTTCTCTGTCCTGCAACAGGTTAAGAAGACCATGGTCCTGTTCCAGAGCCAGGAACAGAGAAGAGAGGCGCTCTACCTTCTTGAAATTGAAAAGATGTTTCAGACATTCGGTGATCTCATTCTGAAGGCTTCTGATTTGGTTTCTGGGGATGGGGATTCTCACTCCCAGAACCAGTTACAGAAACTTCCCACTATTCATGAACACCTTGAGACAATTTCAACACTTGATGATGGAATTTTGATGAGGAAGGAGGAGGAGGAAGAGGGAGAACAGCAGAAGAGTGATTTGGGAGTGGAAAAGGGTTTCTCTGTCAGCAAGGCGTTCTTGTCAGCAGGTGATGGAAGCCCTGCCAAATTAAGTCTCATGAAAGTGGCTACTGTTGTTGAAAATTGTGCTAAAAGTGGAGATACAATCCTTGATCTCAGAGGGAAGTTGGTGGATCAGATGGAGTGGTTGCCAGTTTCAATTGGGAAATTATCTGATGTCACTGAAGTGAACCTATCTGAAAACAGACTCATGGCTCTTCCAGCAACCATTGGGGGACTCAAGGCCTTAACAAAGCTTGATCTTCATTCAAACCAGCTGATAAACCTTCCCCAGTCATTTGGTGAATTGATAAACCTTGTTGAACTGGACCTTCATGCAAACAGATTGAAATCACTTCCTACAACTTTTGGAAACTTGACAAATCTCACTGATCTTGACTTGAGTTCAAATGCGTTCACACAGTTACCAGAGACAATTGGGAGTTTAAGTAGCTTGAAGAGGTTTATCGTTGAGACAAACGAGCTTGAGGAACTGCCTTATACAATTGGGAATTGCTCCTCCTTATCTGTGCTGAAGTTGGATTTTAACCAGCTCAAGGCCCTTCCTGAAGCAATTGGGAAGCTAGAATCTATGGAGATTCTCACTTTGCACTATAATAGAGTTAAGAGGTTGCCTTCAACAATAGGTAATCTATGCAACCTGAAGGAACTTGATGTTAGCTTTAATGAACTCGAATTCGTGCCAGAGAACCTGTGTTTTGTAGTTACTTTGAAGAAATTGAACTTGGGAAATAACTTTGCTGATCTAAGAGCCTTGCCAAGATCAATTGGGAATCTTGAAATGCTTGAGGAGTTGGATATAAGTGATGATCAAATAAGAGTTTTGCCAGAGTCTTTTAGGTTCTTGTCGAAGTTGAGAATTTTCAAAGCTGATGAGACTCCTCTTGAGATGCCACCAAGAGAAGTGATCAAGTTGGGTGCTCAGGAAGTTGTGCAGTACATGGCTGATTATGTCGTTGAGAGGGATGCAAACCTTTTGCCATCAAAGAAGAAAAAGAAGGGATTTTGGTTCTGGTTTTGCTCTATATTTTGCCCTCAACAGAAATGA 1605 0.4312 MPHHSEKDPSSSPQPPSRAILDTVQEITTIYRSLPPRPSVQELEAATSTVDTVNNVEQTKLHEISVQKPPHDVPQELFSVLQQVKKTMVLFQSQEQRREALYLLEIEKMFQTFGDLILKASDLVSGDGDSHSQNQLQKLPTIHEHLETISTLDDGILMRKEEEEEGEQQKSDLGVEKGFSVSKAFLSAGDGSPAKLSLMKVATVVENCAKSGDTILDLRGKLVDQMEWLPVSIGKLSDVTEVNLSENRLMALPATIGGLKALTKLDLHSNQLINLPQSFGELINLVELDLHANRLKSLPTTFGNLTNLTDLDLSSNAFTQLPETIGSLSSLKRFIVETNELEELPYTIGNCSSLSVLKLDFNQLKALPEAIGKLESMEILTLHYNRVKRLPSTIGNLCNLKELDVSFNELEFVPENLCFVVTLKKLNLGNNFADLRALPRSIGNLEMLEELDISDDQIRVLPESFRFLSKLRIFKADETPLEMPPREVIKLGAQEVVQYMADYVVERDANLLPSKKKKKGFWFWFCSIFCPQQK* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2671 534 Gene3D Ribonuclease Inhibitor 197 505 IPR032675 -
Lja4g2671 534 ProSiteProfiles Leucine-rich repeat profile. 284 306 IPR001611 GO:0005515
Lja4g2671 534 Pfam Leucine rich repeat 353 410 IPR001611 GO:0005515
Lja4g2671 534 Pfam Leucine rich repeat 284 341 IPR001611 GO:0005515
Lja4g2671 534 PANTHER LEUCINE-RICH REPEAT-CONTAINING 19 530 - -
Lja4g2671 534 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 5 19 530 - -
Lja4g2671 534 SMART LRR_typ_2 374 396 IPR003591 -
Lja4g2671 534 SMART LRR_typ_2 305 327 IPR003591 -
Lja4g2671 534 SMART LRR_typ_2 397 420 IPR003591 -
Lja4g2671 534 SMART LRR_typ_2 259 281 IPR003591 -
Lja4g2671 534 SMART LRR_typ_2 445 467 IPR003591 -
Lja4g2671 534 SMART LRR_typ_2 236 258 IPR003591 -
Lja4g2671 534 SMART LRR_typ_2 282 304 IPR003591 -
Lja4g2671 534 SMART LRR_typ_2 328 351 IPR003591 -
Lja4g2671 534 SMART LRR_typ_2 352 373 IPR003591 -
Lja4g2671 534 ProSiteProfiles Leucine-rich repeat profile. 307 328 IPR001611 GO:0005515
Lja4g2671 534 SUPERFAMILY L domain-like 214 477 - -
Lja4g2671 534 SMART LRR_bac_2 420 441 - -
Lja4g2671 534 SMART LRR_bac_2 259 278 - -
Lja4g2671 534 SMART LRR_bac_2 351 370 - -
Lja4g2671 534 SMART LRR_bac_2 397 416 - -
Lja4g2671 534 SMART LRR_bac_2 282 301 - -
Lja4g2671 534 SMART LRR_bac_2 305 324 - -
Lja4g2671 534 SMART LRR_bac_2 445 464 - -
Lja4g2671 534 SMART LRR_bac_2 328 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2671 Lja-Chr4 36626785 36629701 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2671 234 482 Receptor kinase-like Gene Family AT2G15080 31.783 7.87e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2671 - - lja:Lj0g3v0066329.1 1033.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2671 4 36626785 36629701 Lja4g2671 4 36626785 36629701 ECH