Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2667 ATGGCTGCTCCTCTCTCCACCATTGTAGATATCTACTTCACTGACACCATAAGAACAAGGTTCACCATCACTTCCCCTTCAAGGTCAAAGACTCATAGAAAATGTGCTGCCACTTCCAATTCCAACACAGAAGCTCCCCTTTCACCAACATCAGACACATCCAACAACAACAAGAACAAGAACAAGAACACTTCATTATCAGACCAACTCACTCCCCTTTCCAACACCACATTACCCACTTCAGAACAAACCCATGTTCTGTCAAAGCCACCAAAACCCACCTGGCTCAACCCCACCAAGGCCAAGCGCCCTGTGCTCAATCACCAGAGGCAGAAACGTGCTTCTCCTTCATACAATCCACAGCTCAGAGATTTCCAGCGCTTTGCTCAGAAGCTGAATGATTGTGACGCCGCTGATTTCACCGCTTGTCTTGAGGAAATCCCACACGCTCCGCTTACCAGGGAAAACGCGCTTTTGCTGCTCAACAGCTTGAAGGCATGGCAGAAGACCCTTATGTTTCTGAACTGGATGAAGACGACCCAGGATTCGTTACCCATGGAAACCATCTTCTACAATGTCACAATGAAGTCTTTGAGGTTTGGGAGGCAGTTTCAGCTGATTGAAGAACTTGCACACCAGATGATTGATGATGGGATTCAACTGGATAACATCACTTACTCCACTATCATCAGCTGTGCCAAGAAGTGCTACCTGTTTGATAAGGCTGTGTACTGGTTTGAGAGGATGTACAAGACCGGTTTGATGCCGGACGAGGTAACTTATTCGGCTATATTAGATGTTTATGCAAGGTTAGGCAAGTTTGAAGAGGTGGTGAGTTTGTATGAGAGAGGTAGAGCAACAGGGTGGAAACCTGACCCTATCACATTCTCTGTGCTGGCGAAGATGTTTGGGGAGGCTGGGGATTATGATGGGATTAGGTATGTTTTGCAAGAGATGAAGTCTCTTAGTGTGCAGCCTAATTTAGTTGTGTACAACACCTTGTTGGAGGCAATGGGAAAGGCTGGGAAGCCAGGGTTTGCGCGGAGCCTGTTTGAAGAAATGATTGACTCGGGGATAGCGCCGAACGAGAAGACTCTAACAGCATTGATCAAGATATATGGCAAGGCCAGGTGGTCTCGCGATGCGTTAGAACTGTGGCAGCGGATGAAGGAAAATGGCTGGCCTATGGATTTTATTCTGTACAATACATTGTTGAATATGTGCGCCGATGTCGGGTTGGTGGAGGAAGCTGAAACTCTATTCAGGGACATGAAACAGTCTGAGCATTGTAGGCCAGACAGTTGGAGTTACACAGCAATGCTCAACATATATGGGAGTGAAGGGGATGTTGACAAGGCAATGAACTTGTTTGAAGAGATGAATAAGTTGGGTATTGAACTAAACGTGATGGGGTGCACCTGTTTGATTCAGTGCTTGGGAAAGGCTATGGAAATCGATGATTTGGTTCGAGTTTTCAATGTTTCAGTGGAGAGAGGAGTTAAACTAGATGATAGGCTATGTGGTTGCTTGTTATCCGTTTTGTCTCTATCTCAAGGTAGCAAGGATGAGGAAAAGGTCCTTGCTTGTTTGCAGCAAGCTAACCCAAAATTGGTTGCTTTCATTCAGTTGATTGTAGATGAGGAAACTAGTTTTGAGACTGTGAAGGGAGAGTTCAAGGGTATCATAAGTAATGCCACGGTTGAGGTGAGAAGACCCTTCTGTAACTGCTTGATTGACATATGCAGAAGCAAAGATCTCCAAGAGAGAGCTCATGAACTACTCTACTTGGGGACCTTGTATGGATTATACCCAGGTCTGCACAGCAAGACAGAGTATGAATGGTGTTTAGACGTTCGATCATTGTCAGTTGGTGCAGCTCTAACTGCACTAGAAGAGTGGATGTGGACACTCACCAAAATTGTTCAGCGAGAGGAGGCGCTGCCGGAGTATTTCTTAGCCCAGACAGGTACTGGTGCTCATAAGTTTGCCCAAGGATTGAACCTTTCTTTTGCTTCTCATGTGAGGAAACTAGCTGCTCCATTTAGGCAGAGTGAGGATAAAGTTGGCTCTTTTATTGCAACTAGAGAGGATTTAGTCTCTTGGATACAATCAAAGTTTCTCTCAACCACTACGGCAACATAG 2142 0.4556 MAAPLSTIVDIYFTDTIRTRFTITSPSRSKTHRKCAATSNSNTEAPLSPTSDTSNNNKNKNKNTSLSDQLTPLSNTTLPTSEQTHVLSKPPKPTWLNPTKAKRPVLNHQRQKRASPSYNPQLRDFQRFAQKLNDCDAADFTACLEEIPHAPLTRENALLLLNSLKAWQKTLMFLNWMKTTQDSLPMETIFYNVTMKSLRFGRQFQLIEELAHQMIDDGIQLDNITYSTIISCAKKCYLFDKAVYWFERMYKTGLMPDEVTYSAILDVYARLGKFEEVVSLYERGRATGWKPDPITFSVLAKMFGEAGDYDGIRYVLQEMKSLSVQPNLVVYNTLLEAMGKAGKPGFARSLFEEMIDSGIAPNEKTLTALIKIYGKARWSRDALELWQRMKENGWPMDFILYNTLLNMCADVGLVEEAETLFRDMKQSEHCRPDSWSYTAMLNIYGSEGDVDKAMNLFEEMNKLGIELNVMGCTCLIQCLGKAMEIDDLVRVFNVSVERGVKLDDRLCGCLLSVLSLSQGSKDEEKVLACLQQANPKLVAFIQLIVDEETSFETVKGEFKGIISNATVEVRRPFCNCLIDICRSKDLQERAHELLYLGTLYGLYPGLHSKTEYEWCLDVRSLSVGAALTALEEWMWTLTKIVQREEALPEYFLAQTGTGAHKFAQGLNLSFASHVRKLAAPFRQSEDKVGSFIATREDLVSWIQSKFLSTTTAT* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2667 713 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 397 431 IPR002885 -
Lja4g2667 713 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 433 467 IPR002885 -
Lja4g2667 713 MobiDBLite consensus disorder prediction 24 90 - -
Lja4g2667 713 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 256 IPR002885 -
Lja4g2667 713 Gene3D Tetratricopeptide repeat domain 412 533 IPR011990 GO:0005515
Lja4g2667 713 Gene3D Tetratricopeptide repeat domain 302 411 IPR011990 GO:0005515
Lja4g2667 713 Gene3D Tetratricopeptide repeat domain 128 301 IPR011990 GO:0005515
Lja4g2667 713 MobiDBLite consensus disorder prediction 24 117 - -
Lja4g2667 713 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Lja4g2667 713 ProSiteProfiles Smr domain profile. 616 699 IPR002625 -
Lja4g2667 713 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 327 361 IPR002885 -
Lja4g2667 713 PANTHER OS03G0856100 PROTEIN 30 705 - -
Lja4g2667 713 TIGRFAM PPR: pentatricopeptide repeat domain 365 397 IPR002885 -
Lja4g2667 713 TIGRFAM PPR: pentatricopeptide repeat domain 259 292 IPR002885 -
Lja4g2667 713 TIGRFAM PPR: pentatricopeptide repeat domain 329 363 IPR002885 -
Lja4g2667 713 TIGRFAM PPR: pentatricopeptide repeat domain 224 258 IPR002885 -
Lja4g2667 713 TIGRFAM PPR: pentatricopeptide repeat domain 294 327 IPR002885 -
Lja4g2667 713 TIGRFAM PPR: pentatricopeptide repeat domain 400 433 IPR002885 -
Lja4g2667 713 TIGRFAM PPR: pentatricopeptide repeat domain 436 469 IPR002885 -
Lja4g2667 713 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Lja4g2667 713 Pfam Pentatricopeptide repeat domain 210 268 IPR002885 -
Lja4g2667 713 PANTHER OS03G0856100 PROTEIN 30 705 - -
Lja4g2667 713 Pfam PPR repeat 400 427 IPR002885 -
Lja4g2667 713 Pfam PPR repeat 294 322 IPR002885 -
Lja4g2667 713 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 291 IPR002885 -
Lja4g2667 713 Pfam PPR repeat family 432 480 IPR002885 -
Lja4g2667 713 Pfam PPR repeat family 326 371 IPR002885 -
Lja4g2667 713 SUPERFAMILY HCP-like 240 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2667 Lja-Chr4 36480947 36483446 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2667 191 527 Glycosyltransferase AT1G05670 24.412 1.39e-25 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2667 - - gmx:100780994 1117.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2667 4 36480947 36483446 Lja4g2667 4 36480947 36483446 ECH