Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2543 ATGGGTACTCGAACGAATTTCTACAAAAACCCATCAATCTCCTACAACAAACACTTCAGCCTCTCCTCTGTTCTTCAGAATCTCCAAGCTTACAACATCGCCACCGGCAATGCTCCTTCCGACGAACAACCACCGCACCCTGCTCCCACCGCCTCCCTCAAACGTCGCCGCCGGGATCCCCAGCCACCACAATCCCGAGCCAATGACCACGACGATCGCGATGAACCTTCCTCTATGTCACACCACGATTACGTCAAAAAGACAAGGAGAGAAGTTGCTTCGTCTCAGAATTGCCACCTCTTTGAATTGACCGAAGATGTCTTGGGTAACCCTAATTCTGCTGTCCCCTTGGTTGATTATGCAAGTGATGAAGGTACTCCTTCAGAATGTGAAGAAACACATACTCTTCCAAATCCTGGTGATGAAAAAGAGTTTGATGGAGTCAAAGGCAGAAATGAGCAACGTTTTCCTGTCTCGGGAGAACCTGTTTGTCTTATGTGTGGAAGATATGGGGAATATATATGCAATGAGACAGATGATGACGTCTGTAGCATGGAGTGCAAAAGTGAACTTTTGGAAATTCTTAAACTGAACGAGGGGTCCTCCCAGGACCAAGTTAAAAATTTCTCCTCATCTGGCATTAGCGATGCCTTACCACTGCCTGTGTTTAGTGATGGTACCTGGGATCATAATCGGCATCGCTGGTCAAACAAGAGATCTAGTCTTTCTACTTATGAATGTTGGAAATGTCAAAGACCTGGTCACATGGCTGAAGATTGTCTAGTAAATAGTTGCAGTCAGATCACAATGGGAAGTAAGAAATCTAGTTCCATTCCAAAGGATCTTCTTGGACTGTATAGAAGATGCCACCAGATTGGCAAAGACTTGTTGGCTGCCAACTGTAATGAATGCCGCAGCTCATTAAATTTGGCTACGTGCCTTGATTGTAGTATTGTCCTTTGTGATGGGGAAGGTCACTTGGATGAGCATATAAGAACGCACCCTTCACACCAAAAATACTATTCACACAAGCTAAAACGTCTGGTTAAATGCTGCAAGCCGACATGCAAGGTGACTGACATCAAGGATCTCTTGATTTGCCACCATTGCTTTGATAAAGCCTTTGATAAGTTCTACGACATGTATACTGCAACATGGAAAGGAGCTGGGCTTTCAATTATATGGGGTTCTATATGCTGTGAAGACCACTTCACCTGGCACAGGATGAATTGTTTAAGTGCAGATGTTGACGGAAGTGCATATATTGTAAACCGCAATGGCCGTAAAGGCAAACATACGCAACTTAGTGACTTCATTTTTTGA 1323 0.4437 MGTRTNFYKNPSISYNKHFSLSSVLQNLQAYNIATGNAPSDEQPPHPAPTASLKRRRRDPQPPQSRANDHDDRDEPSSMSHHDYVKKTRREVASSQNCHLFELTEDVLGNPNSAVPLVDYASDEGTPSECEETHTLPNPGDEKEFDGVKGRNEQRFPVSGEPVCLMCGRYGEYICNETDDDVCSMECKSELLEILKLNEGSSQDQVKNFSSSGISDALPLPVFSDGTWDHNRHRWSNKRSSLSTYECWKCQRPGHMAEDCLVNSCSQITMGSKKSSSIPKDLLGLYRRCHQIGKDLLAANCNECRSSLNLATCLDCSIVLCDGEGHLDEHIRTHPSHQKYYSHKLKRLVKCCKPTCKVTDIKDLLICHHCFDKAFDKFYDMYTATWKGAGLSIIWGSICCEDHFTWHRMNCLSADVDGSAYIVNRNGRKGKHTQLSDFIF* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2543 440 MobiDBLite consensus disorder prediction 52 89 - -
Lja4g2543 440 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN ISOFORM 4 1 440 - -
Lja4g2543 440 SUPERFAMILY Retrovirus zinc finger-like domains 229 260 IPR036875 GO:0003676|GO:0008270
Lja4g2543 440 Gene3D - 146 202 - -
Lja4g2543 440 ProSiteProfiles Zinc finger CCHC-type profile. 247 260 IPR001878 GO:0003676|GO:0008270
Lja4g2543 440 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 440 - -
Lja4g2543 440 MobiDBLite consensus disorder prediction 127 144 - -
Lja4g2543 440 MobiDBLite consensus disorder prediction 35 89 - -
Lja4g2543 440 Gene3D - 240 287 - -
Lja4g2543 440 MobiDBLite consensus disorder prediction 123 144 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2543 - - lja:Lj0g3v0099929.1 734.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2543 4 32326491 32342494 Lja4g2543 4 32326491 32342494 ECH