Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2541 ATGCCGCGAGAGAACCTAACCAATTCAACCTTTAATTTTACCCACATTTTGCTTTCATTGAAGCAAACACGCCCTTCTAGGACTTCTGATCATCAACAGATAAGAGCAAGAGCAAGAGCGAGCGTTGATTTTCTTCGATCGTCTTCTTCACGAGGGAGAATGGCAAAGAGTTATTTCAAACAAGAGCATGATCTTGAGAAGAGAAGAGCTGAGGCTGTTAGGATTAGAGAGAAATATCCAGACCGTATTCCGGTAATTGTGGAGAAGGCAGAAAGAAGTGATATCCCAAGTATTGACAAGAAGAAGTACCTCGTCCCAGCTGATCTCACAGTTGGACAATTTGTCTATGTTATCCGCAAAAGAATTAAATTAAGTGCAGAAAAGGCAATTTTTATATTTGTGGACAATGTCCTTCCACCTACAGGAGCAATTATGTCTGCCATATATGATGAGAAAAAGGATGAAGATGGGTTTCTTTATGTTACTTACAGTGGGGAGAACACCTTTGGAGATCTTACTTCCCACTAG 528 0.4053 MPRENLTNSTFNFTHILLSLKQTRPSRTSDHQQIRARARASVDFLRSSSSRGRMAKSYFKQEHDLEKRRAEAVRIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYDEKKDEDGFLYVTYSGENTFGDLTSH* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2541 175 CDD Ubl_ATG8 65 167 - -
Lja4g2541 175 Gene3D - 40 170 - -
Lja4g2541 175 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 42 170 IPR004241 -
Lja4g2541 175 Pfam Autophagy protein Atg8 ubiquitin like 67 170 IPR004241 -
Lja4g2541 175 SUPERFAMILY Ubiquitin-like 56 170 IPR029071 -
Lja4g2541 175 PANTHER AUTOPHAGY-RELATED PROTEIN 42 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2541 Lja-Chr4 32201469 32205589 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2541 K08341 - gmx:100499835 241.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2541 4 32201469 32205589 Lja4g2541 4 32201469 32205589 ECH