Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2535 ATGGCTTCCAAGGCTGCTATTCTCCTCACTCTCAACATTCTCTTCTTCACAGTTGTAAGCTCCACCTATGTCCCATGCCCTCCACCCCCCACCAAGGGTCACAAAACCCCACCCTCCCCAACAACACCCTCCAAAACACCACCCTCCCCAACACCACCCCCCACTGAGCAACCTAGTTGCCCTAGGGACACCCTCAAGTTTGGTGTGTGTGCTGACGTGTTGAGTTTGATCAATGTGCAGCTTGGAACGCCATCAAAGACCCCATGCTGCTCCCTCCTTAAGGGTCTAGCTGATATAGATGCTGCTGTGTGCCTTTGCACTGCTCTTAGAGCTAATGTCCTTGGCATCAACCTCAACATCCCCATCGACTTGAGCTTGATCCTCAACTACTGTGGAAAGGATGTCCCTAAGGGGTTTGTGTGCTCACCACCCTCCCCAACACCACCATCCCCAACACCACCCTCCAAATCACCACCCTCCCCAACACCACCCTCTCCAACACCACCCTCCAAATCACCACCCTCCCCAACTCCACCCTCCCCAACTCCACCATCCAAATCACCACCCTCCCCAACACCACCCTCTCCAACACCACCCTCCCCAACACCACCATCCCTAACTCCACCCTCCCCAACACCACCCTCCAAATCACCACCCTCCCCAACTCCACCCTCCAAATCACCACCCTCTCCATCACCACCCTCCCCAACACCACCCTGCCCACCACCATCCCCAACTCCACCCTCTCAAACACCACCCTCCAAATCACCACCCTCCCCAACACCACCCTCCCCAACACCACCCTCCAAATCACCACCCTCCCCAACACCCCCCTCCCCAACACCACCCTCCCCAACACCACCCGCCAAATCACTACCCTCCCCAACACCACCCTCCAAATCACCACCCTCCCCAACACCACCCTCCAAAACACCACCCCCCACTGAGCAACCTAGTTGCCCTAGGGACACCCTCAAGTTGGGTGTGTGTGCTGACGTGTTGAGTTTGATCAATGTGCAGCTTGGAACGCCATCAAAGACCCCATGCTGCGCCCTCCTTGAGGGTCTTGCTGATCTTGATGCTGCTGTGTGCCTTTGCACTGCTCTTAGAGCTAATGTCCTTGGCATCAACCTCAACATCCCCATCGACTTGAGTTTGATCCTCAACTACTGTGGAAAAGGTGTCCCTAAGGGGTTCGTGTGCTCTTAA 1209 0.56 MASKAAILLTLNILFFTVVSSTYVPCPPPPTKGHKTPPSPTTPSKTPPSPTPPPTEQPSCPRDTLKFGVCADVLSLINVQLGTPSKTPCCSLLKGLADIDAAVCLCTALRANVLGINLNIPIDLSLILNYCGKDVPKGFVCSPPSPTPPSPTPPSKSPPSPTPPSPTPPSKSPPSPTPPSPTPPSKSPPSPTPPSPTPPSPTPPSLTPPSPTPPSKSPPSPTPPSKSPPSPSPPSPTPPCPPPSPTPPSQTPPSKSPPSPTPPSPTPPSKSPPSPTPPSPTPPSPTPPAKSLPSPTPPSKSPPSPTPPSKTPPPTEQPSCPRDTLKLGVCADVLSLINVQLGTPSKTPCCALLEGLADLDAAVCLCTALRANVLGINLNIPIDLSLILNYCGKGVPKGFVCS* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2535 402 MobiDBLite consensus disorder prediction 142 319 - -
Lja4g2535 402 PANTHER - 2 142 - -
Lja4g2535 402 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 296 402 - -
Lja4g2535 402 CDD HPS_like 58 141 IPR027923 -
Lja4g2535 402 PRINTS Proline rich extensin signature 19 31 - -
Lja4g2535 402 PRINTS Proline rich extensin signature 142 158 - -
Lja4g2535 402 PRINTS Proline rich extensin signature 40 56 - -
Lja4g2535 402 MobiDBLite consensus disorder prediction 142 320 - -
Lja4g2535 402 MobiDBLite consensus disorder prediction 27 60 - -
Lja4g2535 402 PANTHER - 296 402 - -
Lja4g2535 402 SMART aai_6 60 130 IPR016140 -
Lja4g2535 402 SMART aai_6 131 401 IPR016140 -
Lja4g2535 402 CDD HPS_like 318 401 IPR027923 -
Lja4g2535 402 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 2 142 - -
Lja4g2535 402 MobiDBLite consensus disorder prediction 27 59 - -
Lja4g2535 402 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 62 142 IPR036312 -
Lja4g2535 402 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 322 401 IPR036312 -
Lja4g2535 402 Pfam Hydrophobic seed protein 320 402 IPR027923 -
Lja4g2535 402 Pfam Hydrophobic seed protein 60 142 IPR027923 -
Lja4g2535 402 Gene3D - 319 402 IPR036312 -
Lja4g2535 402 Gene3D - 59 143 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2535 Lja-Chr4 31971177 31972385 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2535 313 401 Acyl Lipid Metabolism Gene Families AT4G22490 39.560 2.76e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2535 - - lja:Lj4g3v0148840.1 217.238
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2535 4 31971177 31972385 Lja4g2535 4 31971177 31972385 ECH