Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2530 ATGTCTTCCAAAACCAGTCCCTCCGCCATCGCTCTTTTCCTCACCCTCAACATCCTCTTCTTCACACTCACCTCTGCATGCGGCACTCACAAATGCCGTGGCCCAAGCCCACCCCCAAAGCCAAAGCCAAGCCCATGCCCTTCCCCTCCAGGTGGCTCCAGCACTCCACCAGGAGGCTCTAGCCCTTCCGCTGGCTCTAGCTCTTCAAACGCGACGTGCCCCACTGACGCGCTCAAACTTGGTGTTTGCGCCAACGTTCTGAGCGGGTTGCTGAACGTGACATTGGGTCAAGTACCAGCGACACCATGCTGCTCCGTTATCCAAGGGCTAGCTGACCTTGAAGCTGCAGTTTGCCTCTGCACTGCCCTAAAAGCTAGCATTTTGGGTGTCAGTCTCAATATTCCTATCTCACTCAGCTTGCTCCTCAATGTTTGCTCAAAGGAAGTCCCCAGCGGTTACCAATGTGCCTGA 471 0.5541 MSSKTSPSAIALFLTLNILFFTLTSACGTHKCRGPSPPPKPKPSPCPSPPGGSSTPPGGSSPSAGSSSSNATCPTDALKLGVCANVLSGLLNVTLGQVPATPCCSVIQGLADLEAAVCLCTALKASILGVSLNIPISLSLLLNVCSKEVPSGYQCA* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2530 156 CDD HPS_like 70 155 IPR027923 -
Lja4g2530 156 PANTHER - 61 156 - -
Lja4g2530 156 PANTHER - 9 51 - -
Lja4g2530 156 MobiDBLite consensus disorder prediction 34 56 - -
Lja4g2530 156 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Lja4g2530 156 MobiDBLite consensus disorder prediction 31 72 - -
Lja4g2530 156 MobiDBLite consensus disorder prediction 57 72 - -
Lja4g2530 156 PANTHER 14 KDA PROLINE-RICH PROTEIN DC2.15 9 51 - -
Lja4g2530 156 Pfam Hydrophobic seed protein 72 156 IPR027923 -
Lja4g2530 156 PANTHER 14 KDA PROLINE-RICH PROTEIN DC2.15 61 156 - -
Lja4g2530 156 SMART aai_6 73 155 IPR016140 -
Lja4g2530 156 Gene3D - 70 156 IPR036312 -
Lja4g2530 156 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 76 155 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2530 Lja-Chr4 31743317 31743787 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2530 67 155 Acyl Lipid Metabolism Gene Families AT4G22490 34.831 4.89e-13 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2530 - - gmx:100801985 152.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2530 4 31743317 31743787 Lja4g2530 4 31743317 31743787 ECH