Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2517 ATGGCTTCTTCTGCACCTTTCTTCCTCCTCTTTCTCTTCAGCATTTCCTTGCTTCTCACCTTCTCTTCCGCTGCGGATCCAACATTTGAGTTCAAGTTCGAGGTTTCTTACATCACTGCATCTCCTCTTGGAGTTCCTCAACAGGTCATTGCTATCAACAACGAGTTTCCAGGTCCTGTTATCAATGTAACCACAAACAACAACGTTGTTGTCAATGTCCGGAACAAATTGGATGAGAGCCTCCTCCTTCATTGGTCTGGGATTCAGCAACGGAGGACTTCGTGGCAAGATGGTGTTCTTGGCACAAATTGTCCCATTCCACCGAAATGGAACTGGACTTACCAGTTTCAGGTCAAGGATCAGATTGGGAGCTTTTTCTACTTTCCTTCCCTGCATTTTCAAAGAGCAGCTGGTGGGTTTGGGAGTTTCATCATTAACCCCCGTGCTGACATTCCTATCCCTTTTGATTCGCCGTATGGGGACATTATCGTTTTTATTGGAGATTGGTACACGCGCAATCATACGGATCTGAGGAAGGATCTGGATGATGGAAAAGATCTTGGCATGCCGGATGGTGTTCTCATTAACGGGAAAGGCCCTTATAGATATAACGATACGCTTGTTCCTGATGGCATCGATTTTGAAAACATTGAAGTCCATCCTGGAAAAACCTACCGAGTTCGTGTACATAATGTTGGAGTATCAACAAGTCTGAATTTCCGGATTCAGAACCATAACTTACTTCTAGCAGAGACTGAGGGATCTTATACAGTGCAGCAGAACTACACTAGTTTAGATGTTCATGTTGGACAATCTTATACTTTTCTAGTAACCATGGATCAGAACGCAAGTACAGATTACTACATTGTAGCAAGTGCGAGGTTTGTAAATGAATCACGTTGGCAAAGAGTTACTGGAGTTGGTATCTTGCACTATACAAATTCCAAGGGGAAGGCACGCGGTCCTTTGCCAGCTGCTCCAGAGGACCAATTTGACAAAACTTACTCGATGAACCAAGCAAGATCTATCAGATGGAATGTATCAGCAAGTGGCGCTCGTCCAAACCCACAAGGGTCTTTCAGATATGGTTCCATCAATGTGACTGAGGTTTATGTATTGAAAAATAAACCACGAGTGAAGATTAATGGGAAGAAGCGAGCAACGCTCAGCGGGATCTCTTTTGTCAATCCTTCCACTCCAATCAGGCTAGCTGACCAATTCAAATTAAAAGACATATACAAGCTTGATTTCCCAACTAGGCCTCTTACTGGTTCACCTCGAGCAGAAACATCAGTAATTAATGGAAGTTATAGAGGATTCATAGAAATTATACTGCAGAACAACGACACCAGGATGCATACCTACCACTTGGATGGATATGCATTTTTTGTTGTGGGGATGGACTACGGTGACTGGTCTGATAATAGCAGGGGAACATATAACAAATGGGATGGAATAGCTCGCGCTACAACACAGGTCTATCCTGGAGCATGGACAGCAATTTTGGTCTCCCTCGACAACGTTGGAATTTGGAATCTCAGAACCGAAAACCTCGACTCGTGGTATCTTGGTCAAGAAACATACATCAGGGTTGTCAACCCAGAGCCTAATAACAAGACAGAGCTGCCCATTCCAGACAATGCACTTTTCTGTGGTGCCCTTAGTAAAAAGCAAAAGCCTCAGGATGTTTCTTCTTCTGGTTCTTCAATCAATGGGAATATACTGAAGCTGTTCTTCACTTGGGTGATGTTTGTATGCACCACAATCACCATTATCCAGTAG 1782 0.4366 MASSAPFFLLFLFSISLLLTFSSAADPTFEFKFEVSYITASPLGVPQQVIAINNEFPGPVINVTTNNNVVVNVRNKLDESLLLHWSGIQQRRTSWQDGVLGTNCPIPPKWNWTYQFQVKDQIGSFFYFPSLHFQRAAGGFGSFIINPRADIPIPFDSPYGDIIVFIGDWYTRNHTDLRKDLDDGKDLGMPDGVLINGKGPYRYNDTLVPDGIDFENIEVHPGKTYRVRVHNVGVSTSLNFRIQNHNLLLAETEGSYTVQQNYTSLDVHVGQSYTFLVTMDQNASTDYYIVASARFVNESRWQRVTGVGILHYTNSKGKARGPLPAAPEDQFDKTYSMNQARSIRWNVSASGARPNPQGSFRYGSINVTEVYVLKNKPRVKINGKKRATLSGISFVNPSTPIRLADQFKLKDIYKLDFPTRPLTGSPRAETSVINGSYRGFIEIILQNNDTRMHTYHLDGYAFFVVGMDYGDWSDNSRGTYNKWDGIARATTQVYPGAWTAILVSLDNVGIWNLRTENLDSWYLGQETYIRVVNPEPNNKTELPIPDNALFCGALSKKQKPQDVSSSGSSINGNILKLFFTWVMFVCTTITIIQ* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2517 593 PANTHER MONOCOPPER OXIDASE-LIKE PROTEIN SKS1 13 563 - -
Lja4g2517 593 Gene3D - 20 147 IPR008972 -
Lja4g2517 593 Pfam Multicopper oxidase 35 149 IPR011707 GO:0005507
Lja4g2517 593 Gene3D - 159 352 IPR008972 -
Lja4g2517 593 Pfam Multicopper oxidase 162 314 IPR001117 -
Lja4g2517 593 Pfam Multicopper oxidase 427 534 IPR011706 GO:0005507|GO:0016491
Lja4g2517 593 SUPERFAMILY Cupredoxins 23 175 IPR008972 -
Lja4g2517 593 PANTHER MULTI-COPPER OXIDASE 13 563 IPR045087 -
Lja4g2517 593 SUPERFAMILY Cupredoxins 157 354 IPR008972 -
Lja4g2517 593 Gene3D - 364 563 IPR008972 -
Lja4g2517 593 SUPERFAMILY Cupredoxins 381 552 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2517 Lja-Chr4 31156482 31161156 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2517 - - lja:Lj0g3v0078649.2 1098.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2517 4 31156482 31161156 Lja4g2517 4 31156482 31161156 ECH