Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2462 ATGGACGATTCTTCCGGCCACCGGAATCCACCACCACCTCCCTCCTCCTCCGCCGACACTCCTCCTCCTCCACCTTCTTCCTCCTCCTCCACCTCCTCCTCCGCGGAGAGTCTCCGCCACGTGGAACGCATGATCAACTCCAACCACTACGCATCTCCTTCCAGAACAATCTACTCCGACAGGTTCATTCCCAGCAGATCTGCCTCCAAATTCGCCTTGTTTGACATCTCCACTCCCCCGGAGGGCCGCGACGACACCTCCAGCGCCTACACCACTCTCCTCCGCACCGCTTTGTTCGGTCCCGATGCCGCCGGCGTCGCTCCTCCTGTCACGCCGGACAAGAGGTCGTCTCCGTCGATGTCCTTGCCTAGCCGGAATATTTTCCGGTACAAGATGGAGACTCGCCAGTCCATGCACTCGCTTTCCCCGTTCATGAGCGACGATGCGGTTCCCGGCGTGAATCCGAGCCCCGTCAAGACTCCGAGGAAGGTTCCGCGATCTCCTTATAAGGTTCTGGATGCACCTGCATTGCAAGACGATTTCTATCTGAATCTCGTGGATTGGTCTTCGCACAATGTGTTGGCTGTTGGTTTGGGTAACTGTGTTTATCTCTGGAATGCTTGTAGTAGCAAGGTAACTAAATTATGTGACTTGGGGATTGACGACTGCGTTTGTTCAGTTGGCTGGGCTCAACGCGGTACACATCTTGCTGTTGGAACTAGCAATGGCAAAGTTCAGATTTGGGATGCATCTCGATGCAAGAAGATAAGATCCATGGAGGGTCATCGACTACGCGTTGGGGCCTTGGCCTGGAGTTCATCTCTTTTGTCTTCTGGTGGCCGGGATAAGAATATTTATCAACGAGATATACGTGCACAAGAAGATTATGTCAGTAAACTGTCAGGGCACAAATCAGAGGTTTGTGGACTGAAGTGGTCATATGATAACCGTGAGTTGGCATCTGGAGGAAATGACAACAGATTGTTTGTTTGGAATCAACACTCAACCCAACCTGTTCTGAAGTATTGTGAGCATACAGCAGCTGTTAAAGCTATTGCATGGTCTCCTCATCTTCATGGACTTCTTGCATCTGGGGGTGGAACAGCAGATCGATGTATTCGCTTTTGGAATACAACCACAAACTCGCACTTAAGCTGTATGGACACTGGAAGTCAGGTATGCAACCTTGTCTGGTCCAAAAATGTCAATGAACTAGTAAGCACACATGGCTACTCCCAGAATCAAATAATTGTTTGGAGATACCCCACCATGTCAAAGTTGGCCACTCTTACAGGCCATACGTATAGAGTTCTTTATCTTGCCATCTCTCCAGATGGGCAGACTATTGTAACTGGAGCTGGAGATGAAACACTTAGGTTCTGGAATGTATTCCCTTCCCCAAAATCACAGAATACTGACAGTGAAATTGGAGCATCTTCTCTTGGAAGAACTATTATAAGAGAGAAATTTGAGAACAGAGAACACCATGGTGGAACTTTGCATGGGAAAAACACCACCACAATGGTGTGCCTTACTAATTGTAGAGCCTTTCAGGGAGCTATTTAA 1566 0.4911 MDDSSGHRNPPPPPSSSADTPPPPPSSSSSTSSSAESLRHVERMINSNHYASPSRTIYSDRFIPSRSASKFALFDISTPPEGRDDTSSAYTTLLRTALFGPDAAGVAPPVTPDKRSSPSMSLPSRNIFRYKMETRQSMHSLSPFMSDDAVPGVNPSPVKTPRKVPRSPYKVLDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDCVCSVGWAQRGTHLAVGTSNGKVQIWDASRCKKIRSMEGHRLRVGALAWSSSLLSSGGRDKNIYQRDIRAQEDYVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNSHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKLATLTGHTYRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNTDSEIGASSLGRTIIREKFENREHHGGTLHGKNTTTMVCLTNCRAFQGAI* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2462 521 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 21 487 IPR033010 GO:0010997|GO:0097027|GO:1904668
Lja4g2462 521 MobiDBLite consensus disorder prediction 29 58 - -
Lja4g2462 521 SMART WD40_4 335 377 IPR001680 GO:0005515
Lja4g2462 521 SMART WD40_4 165 206 IPR001680 GO:0005515
Lja4g2462 521 SMART WD40_4 293 332 IPR001680 GO:0005515
Lja4g2462 521 SMART WD40_4 252 289 IPR001680 GO:0005515
Lja4g2462 521 SMART WD40_4 423 462 IPR001680 GO:0005515
Lja4g2462 521 SMART WD40_4 209 249 IPR001680 GO:0005515
Lja4g2462 521 MobiDBLite consensus disorder prediction 7 28 - -
Lja4g2462 521 Pfam Anaphase-promoting complex subunit 4 WD40 domain 219 273 IPR024977 -
Lja4g2462 521 ProSiteProfiles Trp-Asp (WD) repeats profile. 300 341 IPR001680 GO:0005515
Lja4g2462 521 ProSiteProfiles Trp-Asp (WD) repeats profile. 430 463 IPR001680 GO:0005515
Lja4g2462 521 Pfam WD domain, G-beta repeat 426 462 IPR001680 GO:0005515
Lja4g2462 521 Pfam WD domain, G-beta repeat 297 332 IPR001680 GO:0005515
Lja4g2462 521 Pfam WD domain, G-beta repeat 337 377 IPR001680 GO:0005515
Lja4g2462 521 SUPERFAMILY WD40 repeat-like 175 463 IPR036322 GO:0005515
Lja4g2462 521 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 300 332 - -
Lja4g2462 521 MobiDBLite consensus disorder prediction 1 58 - -
Lja4g2462 521 ProSitePatterns Trp-Asp (WD) repeats signature. 449 463 IPR019775 -
Lja4g2462 521 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 430 463 - -
Lja4g2462 521 Gene3D - 158 467 IPR015943 GO:0005515
Lja4g2462 521 PANTHER PROTEIN FIZZY-RELATED 1 21 487 - -
Lja4g2462 521 ProSiteProfiles Trp-Asp (WD) repeats profile. 224 258 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2462 Lja-Chr4 28782674 28789584 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2462 236 465 Miscellaneous Gene Families AT5G08390 21.459 2.25e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2462 K03364 - gmx:100780928 872.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2462 4 28782674 28789584 Lja4g2462 4 28782674 28789584 ECH
Lja4g2462 4 28782674 28789584 Lja4g2462 4 28782674 28789584 PCT