Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2451 ATGGGTGGTGTTTGGTGGTGGAAACTGCTTTTTGCTGCTCTTGCTGTGACTCTCTTGTCTGCTGAATATTGTGCTTCCCAGAAAGATCCGAAGTATACATTCATGCACAATGCAACCACCGCAGCAAACATCTCATACTACGACTACATCATAATTGGGGGTGGCACTGCAGGTTGTCCTTTAGCTGCGACCTTGTCCCAAAACTACAGTGTTTTGGTGCTTGAACGAGGTGGGTCACCCTATGGCAACCCCAACATCACCAACTTAGATACCTTTGGCGCTGCTCTCTCCGACATCTCCCCCACCTCTCCCTCTCAGCGTTTCATCTCTCAAGACGGCGTCATCAACTCCAGAGCTCGCGTCCTTGGCGGCGGTAGTTGTTTGAACGCTGGCTTCTACTCTCGAGCCAGCCCTCAATATGTAAGGGAAGCGGGTTGGGATGGAAAGACTGCGAATGAATCGTACCAGTGGGTGGAGAAATTGGTGGCGTTTAAGCCACATGTAAAACAGTGGCAATCCGCTGTAAGGGATGGCCTGTTGGAGATAGGGGTGGTGCCTAACAATGACTTCACTTATGATCACATTTATGGGACTAAGGTTGGAGGTACCATCTTTGACGAGCAAGGTTTCAGGCACACCGCGGCTGATCTTCTCGAATATGCCAATCCCATTGGAATTACTGTGCTCTTGCATGCCCCTGTGCAAAGGATCTTGTTTAGAATGAAAGGTGCAAGAAAGCCCAGGGCCCATGGAGTGGTGTACAGAGACGCATTAGGGCGTAAACACAAGGCGTACCTGAAGCAGGGGTCCAAGAACGAGATCATTGTATCAGCCGGTGCACTTGGAAGCCCACAGCTTTTAATGTTGAGTGGAGTGGGCCCAGCACAGCACCTTCGAGCCCATAACATTAGTGTAACACTGGACCAGCCATTGGTGGGACAGGGTATGGCAGATAACCCCATGAATGCCATCTTCATCCCATCTCCTGTCCCTGTAGAGGTCTCACTCATTGAGGTTGTCGGCATCACCAGCTTTGGTAGCTACATTGAAGCTGCCAGCGGTGAAAACTTTGCTGGTGGTTCACCAAAGGACTATGGGATGCTCTCCCCAAAGATTGGTCAACTCTCCACGGTTCCTCCAAAGCAGAGGACCCCAGAAGCACTTTCAAAAGCCATAGAATCCATGTCAACTCTCGACCAAGCAGCTTTCAGAGGTGGATTCATCCTCGAGAAAATCATGGGTCCATTCTCCACCGGCCATCTAGAGCTCCAAACCCGCAACCCGAACGACAACCCATCAGTGACCTTCAACTACTTCCAGGACCCGCGAGATCTTCAGAGATGCGTGCAGGGCCTCACCACTGTGGAGAAGGTAATCGAGTCCAAAGCTTTCTCTCCATTCAAATATGAAACCATGCCAATCTCCGTTTTGCTCAACATCACCGCAAGTTCCCCTGTGAACTTGTTGCCCAAACACGCCAATGTGTCAACGTCGCTGGAGCAGTTCTGCAAAGACACCGTGATGACCATTTGGCATTATCATGGAGGCTGTCAAGTTGGGAGAGTTGTGGATAGTGATTATAAGGTTCTTGGTGTGGATGCATTACGTGTTGTTGATGGTTCCACTTTTATTTCTTCTCCTGGAACTAATCCTCAAGCCACTGTTATGATGCTTGGCAGGTATATGGGAGTCAAGATATTGGGAGAGAGACTTGCTGCTGATGATGAATGA 1731 0.4974 MGGVWWWKLLFAALAVTLLSAEYCASQKDPKYTFMHNATTAANISYYDYIIIGGGTAGCPLAATLSQNYSVLVLERGGSPYGNPNITNLDTFGAALSDISPTSPSQRFISQDGVINSRARVLGGGSCLNAGFYSRASPQYVREAGWDGKTANESYQWVEKLVAFKPHVKQWQSAVRDGLLEIGVVPNNDFTYDHIYGTKVGGTIFDEQGFRHTAADLLEYANPIGITVLLHAPVQRILFRMKGARKPRAHGVVYRDALGRKHKAYLKQGSKNEIIVSAGALGSPQLLMLSGVGPAQHLRAHNISVTLDQPLVGQGMADNPMNAIFIPSPVPVEVSLIEVVGITSFGSYIEAASGENFAGGSPKDYGMLSPKIGQLSTVPPKQRTPEALSKAIESMSTLDQAAFRGGFILEKIMGPFSTGHLELQTRNPNDNPSVTFNYFQDPRDLQRCVQGLTTVEKVIESKAFSPFKYETMPISVLLNITASSPVNLLPKHANVSTSLEQFCKDTVMTIWHYHGGCQVGRVVDSDYKVLGVDALRVVDGSTFISSPGTNPQATVMMLGRYMGVKILGERLAADDE* 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2451 576 ProSitePatterns GMC oxidoreductases signature 2. 279 293 IPR000172 GO:0016614|GO:0050660
Lja4g2451 576 SUPERFAMILY FAD/NAD(P)-binding domain 46 570 IPR036188 -
Lja4g2451 576 Pfam GMC oxidoreductase 47 320 IPR000172 GO:0016614|GO:0050660
Lja4g2451 576 PANTHER OSJNBA0019K04.7 PROTEIN 16 571 - -
Lja4g2451 576 Pfam GMC oxidoreductase 415 560 IPR007867 GO:0016614
Lja4g2451 576 PIRSF Alcohol_oxidase 23 576 IPR012132 GO:0050660
Lja4g2451 576 Gene3D - 47 559 IPR036188 -
Lja4g2451 576 Gene3D - 164 509 - -
Lja4g2451 576 SUPERFAMILY FAD-linked reductases, C-terminal domain 316 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2451 Lja-Chr4 28580392 28591182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2451 4 570 Miscellaneous Gene Families AT5G51950 58.741 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2451 - - gmx:100796752 981.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2451 4 28580392 28591182 Lja4g2451 4 28580392 28591182 ECH