Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2421 ATGTGCAAGGTATCATCCTCTACCTCTTCTACTTCAAGTGAGGACCCCAACATGTTAATAACACCTTTGATCCCCAAATCCCCAACATGTCACCAACAAACCCAACAACATAACCATGTGTCCCTTGCCCTCAAAGAAGCAAAATCCATAGCCAACATATCATGGTCCATGGTGTTAACAGGCTTATTACTCTATTCCCGCTCCATGATCTCCATGCTCTTCCTCGGCCGCCTCAGTGACCTTGCTCTCGCCGGCGGCTCTTTAGCCCTCGGCTTCGCCAACATCACCGGCTACTCTGTTCTCTCCGGCCTTGCCATGGGGATGGAACCCATTTGCGGCCAAGCATTCGGAGCCAGAAGATTCAAACTTTTAGGCCTCACGATGCAGAGGATGGTGATTCTCCTCCTCATAACCTCTATTCTAATTGCATTGTTCTGGCTCAATATGAAGAAACTATTGCTACTCTGTCATCAAGAAGAAGACATAGCCAATGAAGCTCAATCCTATATTTTTTATTCTCTCCCTGATCTTCTAGCGCAATCATTGCTACACCCTCTACGAATCTACCTCAGAAGCCAATCAATAACCTTGCCTCTAACATTCTGCGCCGCGGTTTCGATTCTTCTTCACATCCCCATCAATTACCTCCTTGTCTCTGCTCTCAAATTGGGAATCAAAGGCATCGCTTTAGCCTCTGTTTGGACCAATTTCAACCTCGTGGGTTTGTTGATTCTCTACACAATTGTTTCAAGCGCATACAAAAAAACATGGACAGGCATTTCCTGGGGATGCTTCAAAGGTTGGAAACGATTACTTAGTCTTGCAATTCCAAGTTGTTTATCTGTTTGCTTTGAATGGTGGTGGTATGAAATCATGATTTTGCTATGCGGGTTGTTGATTAATCCCTCTGCAAGCGTTGCTTCCATGGGGGTTTTGATTCAAACCACATCATTGATATACATTTTCCCATCTTCTTTGAGCTTTGGTGTGTCCACAAGAGTTGGCAATGAATTGGGTGCAGGAAATCCCCTAAGAGCAAAACTTGCTGCAATTGTAGGACTCTGTTTCAGTTTTATTCTGGGATTCTCTGCTTTGGTTTTTGCTGTTTCAGTGAGGAATGTTTGGGCTTCCATGTTCACACAGGATAAGCAGATCTTTGCTCTAACTTCAATGGTTTTGCCTGTGGTTGGACTATGTGAGCTTGGAAACTCTCCTCAAACAACGGTATGTGGCGTTTTGAGGGGAACCGCTAGGCCGAAATTGGGAGCACACATAAACTTGGGTTGCTTCTATCTTGTGGGAATGCCTGTTTCAGTGTGGTTGAGCTTCTTTGCAGGGTTTGATTTCAAAGGCTTGTGGCTTGGTATGTTGGCAGCTCAAGGGTCTTGCATGGTGACAATGATGTTTGTTTTGGCACGCACTGATTGGGATGGTCAAGCACGAAGAGCAATGGAACTTACATCATCTGATCCTGCTGAAGAACAAGTGGAGGATGTGGAGGAGGAAGAAGAACAAGTTGGGAAATCCATTTTGGGTGCAAGTGCTGCAAAACAAGAATACTCTGGTTTGCTTGTTTGA 1578 0.4493 MCKVSSSTSSTSSEDPNMLITPLIPKSPTCHQQTQQHNHVSLALKEAKSIANISWSMVLTGLLLYSRSMISMLFLGRLSDLALAGGSLALGFANITGYSVLSGLAMGMEPICGQAFGARRFKLLGLTMQRMVILLLITSILIALFWLNMKKLLLLCHQEEDIANEAQSYIFYSLPDLLAQSLLHPLRIYLRSQSITLPLTFCAAVSILLHIPINYLLVSALKLGIKGIALASVWTNFNLVGLLILYTIVSSAYKKTWTGISWGCFKGWKRLLSLAIPSCLSVCFEWWWYEIMILLCGLLINPSASVASMGVLIQTTSLIYIFPSSLSFGVSTRVGNELGAGNPLRAKLAAIVGLCFSFILGFSALVFAVSVRNVWASMFTQDKQIFALTSMVLPVVGLCELGNSPQTTVCGVLRGTARPKLGAHINLGCFYLVGMPVSVWLSFFAGFDFKGLWLGMLAAQGSCMVTMMFVLARTDWDGQARRAMELTSSDPAEEQVEDVEEEEEQVGKSILGASAAKQEYSGLLV* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2421 525 PANTHER MULTIDRUG RESISTANCE PROTEIN 29 499 - -
Lja4g2421 525 Pfam MatE 58 216 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja4g2421 525 Pfam MatE 277 439 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja4g2421 525 PANTHER PROTEIN DETOXIFICATION 29 499 - -
Lja4g2421 525 TIGRFAM matE: MATE efflux family protein 66 453 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja4g2421 525 CDD MATE_eukaryotic 46 482 IPR045069 GO:0042910|GO:1990961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2421 Lja-Chr4 27385127 27386704 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2421 K03327 - gmx:100778250 761.911
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2421 4 27385127 27386704 Lja4g2421 4 27385127 27386704 ECH
Lja4g2421 4 27385127 27386704 Lja4g2421 4 27385127 27386704 PCT