Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2398 ATGGCAACGATGATGCAAGAGTGTCCACGAAGCCCAGAAGCGAAGCTAGGGATGCGAGTGGAGGATCTATGGGATGTGATGGAGCCACAGTTGAGTCCGAATGAGAAGCTTAACGCGTGCTTTGAAAGCATCCCTGTCTCTGCGTTTCCGTTACCTCCTTTGAATCAAGAGATTGAAATCAAATCAGACGCTACTTTGGCGGAAGCTGTGAAGATACTGGCGCGTCACAACGTTTTCAGCGCGCCTGTGGTGGATGTTGATGCTCCTGAAGATGCTAGTTGGATTGATAGATACATCGGGATAGTTGAGTTTGCTGGAATTGTTGTCTGGATTTTGCATCAGTCTGAACCTTCATCTCCTAGGAGTCCATCGACTCCAACCAGTGCAAGCGCGATTGCAGCTAAAGCCAATGGAATTACTTTTGCTCTAGAACTTGAAGCCTTAGGCCTTGGATCTGCTGCAACAACTGCAGGAAACTTTTTTGAGGATCTCACTTCTTCTGAGCTTTATAAGAATACCAAGGTTCGTGATATTTCAGGGACATTCCGCTGGGCCCCGTTTCTTGCTTTAGAGAGATCAAATTCATTCCTAACCATGCTCTTGTTGCTTTCCAAGTACAAGATGAAGAGTGTTCCTGTGGTGGATTTAGGTGCTGGTAGAATTGGTAACATTATTACACAATCTGCAGTCATTCACATGTTGGCAGAATGCGTTGGGCTTCAGTGGTTTGAAAGTTGGGGAGCTAAGGAAATATCTGAAGTTGGTCTTCCCCTTGTGACACCAGATCAAATCATCAAGGTTTATGAGGACGAACCAGTCCTTCAAGCATTTAAACTGATGAGGAAAAAGAGGATTGGAGGGGTACCTGTAATCAGAAGAGGTGGCGCAACTGCAGTTGGTAATATAAGCTTGCGAGATGTTCAATTTTTGCTAACTGCCCCAGAAATTTATCATGACTATAGAACTGTTGCAGTAAAAGACTTCCTGACTGCTGTTAGAACCTACTTAGACAAGAACAAAAATGCATCCTCAATGTCAAGTGAATTTATTACATGCAAAAAGTACTGCACAATCAAAGAGCTGATTCAATTGCTTGACCGTGAGAAGATTCACAGGGTCTATGTTGTGGATGATGATGGGAATCTGCAAGGACTAATCACACTGAGAGATATCATCTCAAGGCTGGTGCATGAGCCGCATGGCTATTTTGGTGATTTCTTTGATGGTGTTCTCCCTCTGCCTGCAAACAGCAGGGTTTAA 1260 0.4421 MATMMQECPRSPEAKLGMRVEDLWDVMEPQLSPNEKLNACFESIPVSAFPLPPLNQEIEIKSDATLAEAVKILARHNVFSAPVVDVDAPEDASWIDRYIGIVEFAGIVVWILHQSEPSSPRSPSTPTSASAIAAKANGITFALELEALGLGSAATTAGNFFEDLTSSELYKNTKVRDISGTFRWAPFLALERSNSFLTMLLLLSKYKMKSVPVVDLGAGRIGNIITQSAVIHMLAECVGLQWFESWGAKEISEVGLPLVTPDQIIKVYEDEPVLQAFKLMRKKRIGGVPVIRRGGATAVGNISLRDVQFLLTAPEIYHDYRTVAVKDFLTAVRTYLDKNKNASSMSSEFITCKKYCTIKELIQLLDREKIHRVYVVDDDGNLQGLITLRDIISRLVHEPHGYFGDFFDGVLPLPANSRV* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2398 419 CDD CBS_pair_SF 262 392 - -
Lja4g2398 419 Pfam CBS domain 263 307 IPR000644 -
Lja4g2398 419 Pfam CBS domain 58 103 IPR000644 -
Lja4g2398 419 Pfam CBS domain 345 396 IPR000644 -
Lja4g2398 419 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 8 419 - -
Lja4g2398 419 SUPERFAMILY CBS-domain pair 262 405 IPR046342 -
Lja4g2398 419 SUPERFAMILY CBS-domain pair 29 235 IPR046342 -
Lja4g2398 419 CDD CBS_pair_SF 60 114 - -
Lja4g2398 419 ProSiteProfiles CBS domain profile. 259 320 IPR000644 -
Lja4g2398 419 PANTHER BNAA06G16460D PROTEIN 8 419 - -
Lja4g2398 419 ProSiteProfiles CBS domain profile. 51 118 IPR000644 -
Lja4g2398 419 SMART cbs_1 348 396 IPR000644 -
Lja4g2398 419 SMART cbs_1 56 112 IPR000644 -
Lja4g2398 419 SMART cbs_1 186 235 IPR000644 -
Lja4g2398 419 SMART cbs_1 263 312 IPR000644 -
Lja4g2398 419 ProSiteProfiles CBS domain profile. 345 403 IPR000644 -
Lja4g2398 419 Gene3D - 248 398 IPR046342 -
Lja4g2398 419 Gene3D - 36 241 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2398 Lja-Chr4 26866356 26869920 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2398 - - gmx:100812388 665.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2398 4 26866356 26869920 Lja4g2398 4 26866356 26869920 ECH