Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2397 ATGGATGCAAATCCTTCTTCTAGGGTTTCTCCATTTCTCACCAATCTTCCCTCTAGAGGTCTCTTCTCTTCCCCGGTCATCTCTTCCAATCCGGGTGGGATGCGTGTTTATGTATGCGATCATGAGACTTCACCTCCAGAGGACCAACTTATTAAGACAAACCAACAGAATATACTGATTCGATCGCTCACACTTAAGAATGGATCTGATGCTTCAAAAAAGAGGACTGCTGAAAAGGCTTTGGATAGCAGAGCTTCAGCTAAGAGAACAACTCCAATAAATACTCGTCAAGAAGGATCAAACAGTCAAACACCTAATAGGGACTTTCACAGCTTGACCGTGGAGAGGCTTCGAGCTCTTTTGAAAGCTAAAGGTCTTTCAACCAAAGGGAAGAAGGAGGAGCTTATTACGCGTCTAAAAGAAGTAAGTAGTTAA 435 0.4299 MDANPSSRVSPFLTNLPSRGLFSSPVISSNPGGMRVYVCDHETSPPEDQLIKTNQQNILIRSLTLKNGSDASKKRTAEKALDSRASAKRTTPINTRQEGSNSQTPNRDFHSLTVERLRALLKAKGLSTKGKKEELITRLKEVSS* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2397 144 ProSiteProfiles SAP motif profile. 109 143 IPR003034 -
Lja4g2397 144 Pfam Det1 complexing ubiquitin ligase 12 66 IPR018276 -
Lja4g2397 144 MobiDBLite consensus disorder prediction 87 110 - -
Lja4g2397 144 SUPERFAMILY SAP domain 104 142 IPR036361 -
Lja4g2397 144 Gene3D SAP domain 106 144 IPR036361 -
Lja4g2397 144 MobiDBLite consensus disorder prediction 71 85 - -
Lja4g2397 144 Pfam SAP domain 110 141 IPR003034 -
Lja4g2397 144 MobiDBLite consensus disorder prediction 66 111 - -
Lja4g2397 144 PANTHER DET1- AND DDB1-ASSOCIATED PROTEIN 1 6 140 IPR033575 GO:0032434
Lja4g2397 144 SMART sap_9 109 143 IPR003034 -
Lja4g2397 144 PANTHER DET1- AND DDB1-ASSOCIATED PROTEIN 1 6 140 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2397 - - aprc:113850031 213.386
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2397 4 26839779 26845497 Lja4g2397 4 26839779 26845497 ECH