Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2374 ATGGGGTTGGAAGGAGAAGAGGGTTCTCAGCAGCCACAGCTTGTGCTGGCCGACAAACTATTCCTTCTGAAACAACCGGATGTGCAAGACATTAACAAGGTTCGCTTCAAGGAGGAAGTTTTCAAGCATGTCAAGGATAACGATATGGTCCCTTTATACGAAACCCTAGTTGCTGATTCTGTGTTCGAAATGGATCGTACCCTTTTGGACTCTATGCGTGCAAAAATTGATGATGAACTCAAAAAGCTTGATGAAAAAATTGCTGATGCTGAGGAAAACTTAGGTGAGAGTGAAGTTCGTGAGGCTCACTTGGCAAAATCCTTGTTTTTCATCCGGATTGGGGACAAGGAGAAAGCCTTGGAACAGCTCAAGATAACAGAAACCAAGACAGTTGCAGTTGGACAGAAGATGGACCTGGTGTTTTATACATTACAGCTTGGTTTCTTTGACATGGATTTTGATCTTATTTCTAAAAGCATTGACAAAGCTAAAAGCTTATTTGAAGAAGGTGGTGACTGGGAAAGGAAGAATCGACTGAAGGTGTATGAAAGCCTGTACTGCATGTCCTCTCGAAATTTCAAGAAAGCTGCCGAATTGTTTTTGGATTCTATATCAACATTTACAACCTATGAACTCTTTCCCTATGACACCTTTATATTTTACACAGTTTTGACGAGCATTATATCATTGGATAGAGTTTCCTTAAAGCAAAAGGTAGTGGATGCTCCTGAGATCTTGACAGTGATTGGCAAAATCCCACATCTTTCGGAGTTTATGAACTCCTTATATGATTGTCAATACAAGTCTTTTTTCTCAGCATTTGCTGGCCTGACAGAGCAAGTTAAGTTGGACCGCTATCTGCATCCACACTTCCGATATTACATGAGGGAGGTCAGGACTGTTGTTTATTCCCAGTTTTTGGAATCTTATAAGAGTGTGACAATTGAAGCCATGGCAAAAGCCTTTGGAGTTACAGTGGATTTCATTGATGTGGAGCTGTCACGTTTTATTGCAGCAGGGAAACTTCATTGTAAGATTGATAAAGTTGCAGGTGTTCTTGAAACTAACCGTCCTGATGCTAAAAATGCTCTTTACCAAGCAACTATCAAGCAAGGGGACTTCCTACTGAACCGCATCCAGAAATTGTCACGTGTGATTGATCTTTAG 1167 0.4087 MGLEGEEGSQQPQLVLADKLFLLKQPDVQDINKVRFKEEVFKHVKDNDMVPLYETLVADSVFEMDRTLLDSMRAKIDDELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKEKALEQLKITETKTVAVGQKMDLVFYTLQLGFFDMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYESLYCMSSRNFKKAAELFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPHLSEFMNSLYDCQYKSFFSAFAGLTEQVKLDRYLHPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVDFIDVELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2374 388 Pfam 26S proteasome subunit RPN7 65 238 IPR045135 -
Lja4g2374 388 Coils Coil 69 100 - -
Lja4g2374 388 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 289 372 - -
Lja4g2374 388 ProSiteProfiles PCI domain profile. 192 360 IPR000717 -
Lja4g2374 388 PANTHER 26S PROTESOME SUBUNIT 6 4 388 IPR019585 -
Lja4g2374 388 SMART PINT_4 289 372 IPR000717 -
Lja4g2374 388 PANTHER OS02G0600100 PROTEIN 4 388 - -
Lja4g2374 388 Pfam PCI domain 254 356 IPR000717 -
Lja4g2374 388 Gene3D - 20 339 - -
Lja4g2374 388 SUPERFAMILY "Winged helix" DNA-binding domain 284 365 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2374 Lja-Chr4 26556340 26567472 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2374 K03037 - gmx:100810692 713.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2374 4 26556340 26567472 Lja4g2374 4 26556340 26567472 ECH