Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2367 ATGGCTTCGCAAGATAAAGGTCGGCCATTGCCTAAATTTGGTGAGTGGGATGTGAACAATCCTGCGTCAGCCGAAGGGTTTACTGTCATATTCAACAAGGCTAGAGATGAGAAGAAGACTAGCAGTTCTGCAACTAACATGGCAACTCCACGTAAATCTGATTCTGAGTCCAAGAATGCTAATTATGCTCAGTTTCCTCCTACAAAGAGAAAGTGGTTTTGCTGCGGTTAG 231 0.4416 MASQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTSSSATNMATPRKSDSESKNANYAQFPPTKRKWFCCG* 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2367 76 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 5 40 IPR008700 -
Lja4g2367 76 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 1 75 IPR040387 -
Lja4g2367 76 MobiDBLite consensus disorder prediction 41 62 - -
Lja4g2367 76 PANTHER RPM1-INTERACTING PROTEIN 4-LIKE 1 75 - -
Lja4g2367 76 MobiDBLite consensus disorder prediction 34 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2367 Lja-Chr4 26511326 26513095 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2367 - - zju:107418198 125.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2367 4 26511326 26513095 Lja4g2367 4 26511326 26513095 ECH