Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2359 ATGGGAATGAAGAACCTCTTCTGTGTTGCTCTGTTTTCCCTTGCTCTGTTTCTCAGTGTTGCAGAGAGCTTTGATTACCATGAGAAAGATTTGGCCTCCGAGGAAGGCTTGTGGGATTTGTATGAAAGATGGAGAAGCCACCACACGGTTTCTCGAAGCCTCGACGAGAAGCACAAGCGCTTCAATGTGTTCAAAGCCAATGTGATGCATGTCCATGAAACCAACAAATTGGACAAGCCTTACAAGCTCAAGTTGAACAAGTTTGCTGACTTGACCAACTATGAATTCAAAAGCATCTATGCTTCCTCAAAGATTGATCATCACAGAATGTTCCATGGAATTCCACGAGGGAATGGAAGCTTCATGTATGAGAATGTTGATAGTGTTCCCATTTCCAAAGATTGGAGGACGAGTGGTGCTGTCACTCCGGTAAAGGATCAAGGCCAATGTGGTAGTTGCTGGGCGTTTTCAGCTATTGCAGCTGTTGAAGGTATTAACCAAATCAGGACACATCATCTAGTGTCCTTGTCAGAGCAAGAGCTTGTAGATTGTGACGTTGAAGTGAATGAAGGATGCAATGGTGGGTTCATGGCGAAGGCATTGGAGTTCATCAAGGAAAAAGGCATAACATCAGAAAGTATTTACCCTTATACAGCAACAGATGGAACCTGTAATACCCAAAAGATGGTGAATGAACCAGCAGTGTCAATTGATGGCTATGAGATTGTTCCAGAGAACAATGAGGTTGCATTACTCAAAGCTGCTGCAAACCAACCTATATCTGTAGGCATTGATGCTGGGGGATCTGATTTCCAGTTCTACTCTGAGGGAGTATTTACTGGAGACTGTGGCACTGAACTGGATCATGGAGTAGCAATTGTGGGGTATGGAGCAGCACAAGATGGAACAAAATACTGGATAGTGAAGAACTCGTGGGGAGCCGATTGGGGAGAACAAGGTTACATTCGAATGAAAAGGGGAATATCTAAGAAGCAAGGTCTATGCGGCATAGCGATGGAGGCTTCTTATCCAATCAAAAGTTCACCAACTCTTAAAGACGAACTTTAA 1068 0.4382 MGMKNLFCVALFSLALFLSVAESFDYHEKDLASEEGLWDLYERWRSHHTVSRSLDEKHKRFNVFKANVMHVHETNKLDKPYKLKLNKFADLTNYEFKSIYASSKIDHHRMFHGIPRGNGSFMYENVDSVPISKDWRTSGAVTPVKDQGQCGSCWAFSAIAAVEGINQIRTHHLVSLSEQELVDCDVEVNEGCNGGFMAKALEFIKEKGITSESIYPYTATDGTCNTQKMVNEPAVSIDGYEIVPENNEVALLKAAANQPISVGIDAGGSDFQFYSEGVFTGDCGTELDHGVAIVGYGAAQDGTKYWIVKNSWGADWGEQGYIRMKRGISKKQGLCGIAMEASYPIKSSPTLKDEL* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2359 355 PRINTS Papain cysteine protease (C1) family signature 305 311 IPR000668 GO:0006508|GO:0008234
Lja4g2359 355 PRINTS Papain cysteine protease (C1) family signature 147 162 IPR000668 GO:0006508|GO:0008234
Lja4g2359 355 PRINTS Papain cysteine protease (C1) family signature 289 299 IPR000668 GO:0006508|GO:0008234
Lja4g2359 355 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 305 324 IPR025661 -
Lja4g2359 355 SMART Inhibitor_I29_2 41 96 IPR013201 -
Lja4g2359 355 Pfam Cathepsin propeptide inhibitor domain (I29) 41 96 IPR013201 -
Lja4g2359 355 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 147 158 IPR000169 -
Lja4g2359 355 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 287 297 IPR025660 -
Lja4g2359 355 CDD Peptidase_C1A 130 344 IPR039417 -
Lja4g2359 355 Gene3D Cysteine proteinases 15 347 - -
Lja4g2359 355 Pfam Papain family cysteine protease 129 345 IPR000668 GO:0006508|GO:0008234
Lja4g2359 355 SUPERFAMILY Cysteine proteinases 38 345 IPR038765 -
Lja4g2359 355 PANTHER KDEL-TAILED CYSTEINE ENDOPEPTIDASE CEP1 21 349 - -
Lja4g2359 355 SMART pept_c1 129 345 IPR000668 GO:0006508|GO:0008234
Lja4g2359 355 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 21 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2359 Lja-Chr4 26096989 26099115 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2359 K16292 - gmx:100806581 552.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2359 4 26096989 26099115 Lja4g2359 4 26096989 26099115 ECH