Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2357 ATGGCGACAGTTTGCAAGTCGCAAGAAGAAATCGCCCAAAAAGCTATCAATCATGCTTTGAAGTCTCTGCGGAAGCGCCATTTGCTCGAAGAAGCTGCTCATGCTCCTGCTTTTCTCGCACTTTCTAGACCCATTGTTTCCCAGGGCTCTGAGTGGAAAGAGAAAGCAGAGAACTTGCAAGTGGAACTTCAGCAATGCTATAAAGCTCAATCTCGGTTGTCTGAGCAACTTGTTGTGGAAGTAGCTGATTCCAGAGCTTCAAAAGCTTTGGTTCAGGAGAAAGACAATGCAATTGCTGATCTGCAGAAGGAGTTAACCGAAATGAGGGATGAGTTCTCTCAATTAAAGGTGGACTTGGAACAAAAGATCAAAGAGCTAGAAGTGATTGTGAGTGAGAATTCAGAACTTAAAGCACAACTGGAGCAGATGACTGCCCAATGTAAGAAAGCTGAAGCTGAAAATAAGATGTTGATTGACCGCTGGATGTTGGAAAAGATGAAGGATGCTGAGCGCCTAAATGAGGCAAATGCCCTGTATGAAGAGATGGTTGAGCGGCTAAGAGCCAGTGGCTTAGAACAACTAGCAAGGCAGCAGGTGGATGGCGTAGTTCGGCGATGTGAAGAAGGTGCTGAATTCTTTTTGGATTCCAACATCCCTTCCACTTGCAAGTTCAGGTTAAATGCACATGAAGGGGGTTGTGCTTCCATATTGTTTGAGTTCAACTCTAGTAGATTAATTACAGGGGGACAGGACCAGTCAGTTAAAGTGTGGGATACTAATACAGGATCTGTATGTTCTAATCTTCATGGCTGCATTGGCTCAGTATTGGATCTCACGATCACCCATGATAATCGTTCTGTCATTGCTGCAAGCAGTTCAAACAACTTGTATGTTTGGGATCTCAACTCAGGCAGGGTCCGTCATACCCTCACCGGGCACAAAGATAAAGTTTGTGCTGTTGATGTCAGCAAGGTTTCCAGTCGTCATGTGGTCAGTGCAGCTTACGATCGTACTATAAAAGTTTGGGACCTAATGAAAGGTTACTGCACAAACACAATCATTTTTGCCAGCAACTGCAATGCACTTTGCTTCAGCATGGATGGACAGACCATATATTCTGGACACGTTGATGGCAACCTTCGGTTATGGGACATTCAGAGTGGAAAGCTACTAAGTGAGGTTGCTGCACATTCACTTGCTGTCACATCAATTTCCCTTTCTCGAAACGGAAATGTTGTACTGACGAGTGGAAGGGACAATGTGCACAATTTGTTTGATGTGCGATCTCTGGAAGTTTGCAGTTCATTTAGAGACACAGGAAACAGAGTGGCTTCTAATTGGAGTCGCTCCTGTATTAGTCCCGACAACAGTCATGTTGCTGCTGGGTCTGCTGATGGATCTGTTCATATTTGGTCAGTACATAAAAATGAAATTGTCAGTACTCTGAAGGAACATACGTCCTCTGTTCTTTGTTGCAGATGGAGTGGGATTGGAAAACCGTTAGCTTCAGCTGACAAGAATGGGATTGTCTGCATCTGGAAGTAA 1545 0.4434 MATVCKSQEEIAQKAINHALKSLRKRHLLEEAAHAPAFLALSRPIVSQGSEWKEKAENLQVELQQCYKAQSRLSEQLVVEVADSRASKALVQEKDNAIADLQKELTEMRDEFSQLKVDLEQKIKELEVIVSENSELKAQLEQMTAQCKKAEAENKMLIDRWMLEKMKDAERLNEANALYEEMVERLRASGLEQLARQQVDGVVRRCEEGAEFFLDSNIPSTCKFRLNAHEGGCASILFEFNSSRLITGGQDQSVKVWDTNTGSVCSNLHGCIGSVLDLTITHDNRSVIAASSSNNLYVWDLNSGRVRHTLTGHKDKVCAVDVSKVSSRHVVSAAYDRTIKVWDLMKGYCTNTIIFASNCNALCFSMDGQTIYSGHVDGNLRLWDIQSGKLLSEVAAHSLAVTSISLSRNGNVVLTSGRDNVHNLFDVRSLEVCSSFRDTGNRVASNWSRSCISPDNSHVAAGSADGSVHIWSVHKNEIVSTLKEHTSSVLCCRWSGIGKPLASADKNGIVCIWK* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2357 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 309 IPR001680 GO:0005515
Lja4g2357 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 453 481 IPR001680 GO:0005515
Lja4g2357 514 Gene3D - 214 356 IPR015943 GO:0005515
Lja4g2357 514 Gene3D - 357 446 IPR015943 GO:0005515
Lja4g2357 514 Gene3D - 447 514 IPR015943 GO:0005515
Lja4g2357 514 Coils Coil 91 160 - -
Lja4g2357 514 Pfam Autophagy protein 16 (ATG16) 48 173 IPR013923 -
Lja4g2357 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 226 267 IPR001680 GO:0005515
Lja4g2357 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 482 514 IPR001680 GO:0005515
Lja4g2357 514 PANTHER AUTOPHAGY PROTEIN 16-LIKE 8 514 IPR045160 GO:0000045
Lja4g2357 514 PRINTS G protein beta WD-40 repeat signature 330 344 IPR020472 -
Lja4g2357 514 PRINTS G protein beta WD-40 repeat signature 245 259 IPR020472 -
Lja4g2357 514 PRINTS G protein beta WD-40 repeat signature 371 385 IPR020472 -
Lja4g2357 514 SUPERFAMILY WD40 repeat-like 218 514 IPR036322 GO:0005515
Lja4g2357 514 ProSitePatterns Trp-Asp (WD) repeats signature. 330 344 IPR019775 -
Lja4g2357 514 Coils Coil 169 189 - -
Lja4g2357 514 Gene3D - 91 162 - -
Lja4g2357 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 310 352 IPR001680 GO:0005515
Lja4g2357 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 394 435 IPR001680 GO:0005515
Lja4g2357 514 Pfam Anaphase-promoting complex subunit 4 WD40 domain 357 405 IPR024977 -
Lja4g2357 514 PANTHER AUTOPHAGY-RELATED 16, ISOFORM F 8 514 - -
Lja4g2357 514 SMART WD40_4 303 343 IPR001680 GO:0005515
Lja4g2357 514 SMART WD40_4 387 426 IPR001680 GO:0005515
Lja4g2357 514 SMART WD40_4 219 258 IPR001680 GO:0005515
Lja4g2357 514 SMART WD40_4 261 300 IPR001680 GO:0005515
Lja4g2357 514 SMART WD40_4 346 384 IPR001680 GO:0005515
Lja4g2357 514 SMART WD40_4 429 472 IPR001680 GO:0005515
Lja4g2357 514 SMART WD40_4 475 514 IPR001680 GO:0005515
Lja4g2357 514 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 226 263 - -
Lja4g2357 514 ProSitePatterns Trp-Asp (WD) repeats signature. 245 259 IPR019775 -
Lja4g2357 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 361 393 IPR001680 GO:0005515
Lja4g2357 514 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 310 344 - -
Lja4g2357 514 ProSitePatterns Trp-Asp (WD) repeats signature. 371 385 IPR019775 -
Lja4g2357 514 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 482 514 - -
Lja4g2357 514 CDD WD40 222 514 - -
Lja4g2357 514 Pfam WD domain, G-beta repeat 478 514 IPR001680 GO:0005515
Lja4g2357 514 Pfam WD domain, G-beta repeat 306 343 IPR001680 GO:0005515
Lja4g2357 514 Pfam WD domain, G-beta repeat 451 472 IPR001680 GO:0005515
Lja4g2357 514 Pfam WD domain, G-beta repeat 222 258 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2357 Lja-Chr4 26073268 26076286 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2357 369 513 Miscellaneous Gene Families AT5G08390 24.138 7.89e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2357 K17890 - gmx:100778336 899.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2357 4 26073268 26076286 Lja4g2357 4 26073268 26076286 ECH