Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2355 ATGAAAATCATGGATCACCGACCGAAAGATTTCCATCTTCTTCCCCACAATCCATCTTCGCTCTCTGAAACAACAATAATGAATAACTCCACCCCTCTCCATGATAACGCGAACTCTATTCAATGTGTGACTTCTCTCAAAACACTAACACCGCACATAACATGTCTTGCGGTTCACCGGAACTTTCTCTATGCCGCGTCCCTAAACCTAATCAACGTCTTCGACCTCTCCCATTACACCCTCATCGACACCTTCAACCAAAGCCCTCGTTCAGGTTTCGTCAAATCCATCACGTTCAATGGTTCAAAAATCTTCACTGCTCACCAAGACTGTAAGATCCGTGTCTGGATCATCACCCCATCAAAACGACACCGTCTCTTAACTTCCCTTCCCACCGTCAAGGACCGTCTCCGACGCTGCATCGTGCCGAAAAACTACGTTACCTCTCGCCGCCACCGTAAGAGCCTTTGGATCCAGCACAACGACACCGTTTCGGGTTTGGCGGTGAACGGGAGGCTCATGTATTCAGTTTCGTGGGATAGGAGTTTCAAGATTTGGGATTTAACGAGGAATTACCGTTGTTTGGAGTCTGTTAAGGCGCATGAGGACGCTATTAACGCCGTGACAGTTGGACGTGACGGCGCAGTTTACACGGCGTCGGCCGACGGGTGCTTGAAGATTTGGAAGAGGGATGAGAAGTTGAAACGGCACGTGCTGGCGAGCAGTGTTGTAGGGAAGCAGAGGCCAACTGTTAACGCGCTTGTGCTGGATGACGGTGGCGAGGAGTTGTTTTCTGGCGGTAGCGACGGGAGGATCTGCCGGTGGGAGAGTGAGTGCGGCGGAGGGGAGGGTGTTGTGTTGGTGGAGACGTTGAGGGGTCATGGTGGGGCTGTGCTGTGTTTGGTCCACGTGGGTGGGTTGTTGGCGAGCGGGGCAGCGGATGGGACGGTGAGGATCTGGCGGCGGGAAAAGGGGAGTGGCGGGTATTTTTGCGGGGCGGTGTTGGGAGGGCATGAGAAACCGGTGAAGTCGTTGGTGGCGGTTTCCGGTGGTGGAGGTGACTCGAATGGTGTCGTGACGGTTTTCAGTGGAAGCCTAGATGGGGAGATTAAGGTGTGGGAGGTGTTTGCTGGTTCAGTTTGA 1143 0.5328 MKIMDHRPKDFHLLPHNPSSLSETTIMNNSTPLHDNANSIQCVTSLKTLTPHITCLAVHRNFLYAASLNLINVFDLSHYTLIDTFNQSPRSGFVKSITFNGSKIFTAHQDCKIRVWIITPSKRHRLLTSLPTVKDRLRRCIVPKNYVTSRRHRKSLWIQHNDTVSGLAVNGRLMYSVSWDRSFKIWDLTRNYRCLESVKAHEDAINAVTVGRDGAVYTASADGCLKIWKRDEKLKRHVLASSVVGKQRPTVNALVLDDGGEELFSGGSDGRICRWESECGGGEGVVLVETLRGHGGAVLCLVHVGGLLASGAADGTVRIWRREKGSGGYFCGAVLGGHEKPVKSLVAVSGGGGDSNGVVTVFSGSLDGEIKVWEVFAGSV* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2355 380 PRINTS G protein beta WD-40 repeat signature 308 322 IPR020472 -
Lja4g2355 380 PRINTS G protein beta WD-40 repeat signature 361 375 IPR020472 -
Lja4g2355 380 PRINTS G protein beta WD-40 repeat signature 174 188 IPR020472 -
Lja4g2355 380 ProSiteProfiles Trp-Asp (WD) repeats profile. 291 320 IPR001680 GO:0005515
Lja4g2355 380 ProSiteProfiles Trp-Asp (WD) repeats profile. 198 229 IPR001680 GO:0005515
Lja4g2355 380 SMART WD40_4 78 117 IPR001680 GO:0005515
Lja4g2355 380 SMART WD40_4 39 75 IPR001680 GO:0005515
Lja4g2355 380 SMART WD40_4 151 187 IPR001680 GO:0005515
Lja4g2355 380 SMART WD40_4 191 229 IPR001680 GO:0005515
Lja4g2355 380 SMART WD40_4 328 374 IPR001680 GO:0005515
Lja4g2355 380 SMART WD40_4 236 276 IPR001680 GO:0005515
Lja4g2355 380 SMART WD40_4 284 321 IPR001680 GO:0005515
Lja4g2355 380 ProSitePatterns Trp-Asp (WD) repeats signature. 361 375 IPR019775 -
Lja4g2355 380 Pfam WD domain, G-beta repeat 331 373 IPR001680 GO:0005515
Lja4g2355 380 Pfam WD domain, G-beta repeat 193 229 IPR001680 GO:0005515
Lja4g2355 380 Pfam WD domain, G-beta repeat 288 320 IPR001680 GO:0005515
Lja4g2355 380 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 36 375 IPR045182 -
Lja4g2355 380 ProSiteProfiles Trp-Asp (WD) repeats profile. 361 380 IPR001680 GO:0005515
Lja4g2355 380 PANTHER TRANSDUCIN/WD40 REPEAT PROTEIN 36 375 - -
Lja4g2355 380 Gene3D - 283 380 IPR015943 GO:0005515
Lja4g2355 380 Gene3D - 27 280 IPR015943 GO:0005515
Lja4g2355 380 SUPERFAMILY WD40 repeat-like 39 376 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2355 Lja-Chr4 26041636 26043775 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2355 191 374 Acyl Lipid Metabolism Gene Families AT3G18860 21.164 2.34e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2355 - - aprc:113874855 528.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2355 4 26041636 26043775 Lja4g2355 4 26041636 26043775 ECH