Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2337 ATGATCCGCGTGAAGGCAATAGCAGTAGCCACCTCCCTCCGATTCCTCAACTCGTCACTCGCCACCCGAGTCCTCGCAACTCGGAACCAGGTGACTCACTTCTCTTCCTACACTCCACAACCCCTTCTGGGTCGCTCTCACGATTTGCGTTTTCCCTACACTCACCATAGAATCTACTTCTCTTCCAAACCCACCTCCATTTTGGAGCTTGTTCTCACCAACGATTGGTCCCAAGGGGTTGAGCAAGAGTTAGAAAAGTGTTCACCGTCTTTGACCCATGAAACTGTTCTCTTCGTTTTGAAGCGATTGGACAAAAACCCAGAAAAAGCTTCGTCGTTTTTCAACTGGGTCAGTGAGAAAGAGTGGTTCAGGGCAAGTTCTACTGTGTATAGTTTGATTGCTAGGATCTTGGCGAATAAGGAGACGATGAAGCAGTTTTGGGTTACTCTGAGGATGATGAAGGAGAAAGGGTTTTACCTCGATGAAGAGACGTATTATACAATTTCAGTTGGGTTTAAGAGGGCAAAGATGAACAGTGATTCTGCAGCTCTTACTCATTTCTACAATAGGATGCTTGAGGATAATACTACACAAAGTGTTGTCACCAAGGTGGTTGGTATTGTGTCAGGGTCTGAGGGGGGTGATGATGGTGAGGTTAAGAATGAGTTGGCGAAGCTCGAGATTCAACTGTCTGATAATTTTGTGATCAGGGTTATGAAAGAGCTTCGAAGAAGCCCTTTAAAGGCTTACACATTCTTTAAGTGGGTTGGGGAGCAATCTGATTATGAGCATAATACAGTGACTTTCAATGCGATTGCGAGAGTTCTTGCGAGGTCTGATTCGATTGAGGAGTTTTGGAGTGTTATTGAGGAGATGAAGGGGCTGGGTCATGAATTGGACATTGATACCTACATAAAGGTATCGAGGCAGCTTCAGAAATTTAGGATGATGGAGGATGCTGTCAAGCTTTATGAGCTTATGATGGATGGTTCATATAAGCCATCTGTTCAGGATTGCTATATGCTTTTAAAGAACATTTCTGGCGATGATAAGCCAAATTTGGATTTAGTTTTCAGGGTCGCTAAGAAATACGAGTCGGCAGGGCATACTCTCTCCAAGGCAATCTATGATGGGATCCACAGGTCTTTGACACGTTCTGGGAAATTTGATGAAGCTGAAAATATTGTTAACACTATGAGAAATGCTGGCTATGAGCCTGATAACATCACCTACAGTCAAGTGGTTTTTGGACTTTGTAAGGCGGGAAGGCTTGAAGAAGCATGTGAGGTGCTGGAGGAGATGGAATCTTGTGGATGTATCCCTGATATCAAGACTTGGACCATCTTGATCAAAGGGCACTGTGATGCAAATGAAGTAGATCAGGCATTGGTTTATTTTACTAAGATGATTGAAAAGGGCTGTGATGCAGATGCTGATCTGTTGGATGTTCTGGTTGAAGGGTTTCTCAATCAACAGAGAATAGATGGTGCATACAAGTTAATGGTTGAGATAAGTAATAACTGTCGTATATCTCCGTGGCAAGCTACGTATAAGAAAATAATTGAAAGGCTTTTAGGAATCAGAAAGTTTGAGGAGGGACTTGACCTTCTTCGCATGATGAAGAGCCACAACTTCCCTCCATACCATGAACCTTTTGTGTCATATGTTTCAAAGTTCGGGAGCGTGGATGACACTGCAGAGTTCCTGAAGGCATTAAGTGTGAAAAATTACCCATCTCTTTCATCGTACCTTCAGGTTTTTGAAGCCTTCTTCCAAGAAGGTAGATTATCTGAGGCCAAAGATCTATTATACAAGTGTCCTCACCATATACGCAATCATAGTAAAATCTGTGAACTTTTTGGTTCACCTGAGAGTGGCATCGCCGCTACTTGA 1893 0.4316 MIRVKAIAVATSLRFLNSSLATRVLATRNQVTHFSSYTPQPLLGRSHDLRFPYTHHRIYFSSKPTSILELVLTNDWSQGVEQELEKCSPSLTHETVLFVLKRLDKNPEKASSFFNWVSEKEWFRASSTVYSLIARILANKETMKQFWVTLRMMKEKGFYLDEETYYTISVGFKRAKMNSDSAALTHFYNRMLEDNTTQSVVTKVVGIVSGSEGGDDGEVKNELAKLEIQLSDNFVIRVMKELRRSPLKAYTFFKWVGEQSDYEHNTVTFNAIARVLARSDSIEEFWSVIEEMKGLGHELDIDTYIKVSRQLQKFRMMEDAVKLYELMMDGSYKPSVQDCYMLLKNISGDDKPNLDLVFRVAKKYESAGHTLSKAIYDGIHRSLTRSGKFDEAENIVNTMRNAGYEPDNITYSQVVFGLCKAGRLEEACEVLEEMESCGCIPDIKTWTILIKGHCDANEVDQALVYFTKMIEKGCDADADLLDVLVEGFLNQQRIDGAYKLMVEISNNCRISPWQATYKKIIERLLGIRKFEEGLDLLRMMKSHNFPPYHEPFVSYVSKFGSVDDTAEFLKALSVKNYPSLSSYLQVFEAFFQEGRLSEAKDLLYKCPHHIRNHSKICELFGSPESGIAAT* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2337 630 Pfam PPR repeat 403 435 IPR002885 -
Lja4g2337 630 Pfam PPR repeat 438 469 IPR002885 -
Lja4g2337 630 Gene3D Tetratricopeptide repeat domain 354 523 IPR011990 GO:0005515
Lja4g2337 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Lja4g2337 630 PANTHER OS01G0970900 PROTEIN 7 622 - -
Lja4g2337 630 Pfam PPR repeat 267 296 IPR002885 -
Lja4g2337 630 TIGRFAM PPR: pentatricopeptide repeat domain 381 407 IPR002885 -
Lja4g2337 630 TIGRFAM PPR: pentatricopeptide repeat domain 445 477 IPR002885 -
Lja4g2337 630 TIGRFAM PPR: pentatricopeptide repeat domain 409 443 IPR002885 -
Lja4g2337 630 TIGRFAM PPR: pentatricopeptide repeat domain 267 300 IPR002885 -
Lja4g2337 630 Gene3D Tetratricopeptide repeat domain 70 208 IPR011990 GO:0005515
Lja4g2337 630 Gene3D Tetratricopeptide repeat domain 218 353 IPR011990 GO:0005515
Lja4g2337 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 372 406 IPR002885 -
Lja4g2337 630 PANTHER OS01G0970900 PROTEIN 7 622 IPR044578 GO:0008380
Lja4g2337 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 442 476 IPR002885 -
Lja4g2337 630 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2337 Lja-Chr4 25840967 25843142 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2337 371 602 Miscellaneous Gene Families AT4G11690 23.305 4.04e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2337 - - gmx:100815857 952.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2337 4 25840967 25843142 Lja4g2337 4 25840967 25843142 ECH