Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2332 ATGGAGTCTTCACTCGTGATTAAGGTGAAATATGGTGATACACTTCGGCGGTTTAATGCGCCTGTGGCTGAGAATAATAGGTTGGATCTTAACATGGCTGGGCTGAGGGCCAAGATATGTTCTATTTTCGATTTCGCTGCTGATGCGAAGCTGATTTTGACATACGTTGATGAAGATGGTGACTCGGTGACTCTTGTGGATGATGAGGACTTGCTTGATGTGATGAGGCAGAAATTGAAATTCTTGAAAATTGATGTGAAAATGGTTAATGACAATGTTGGTAATTCAAATTTTGGGTCTAGTGGAAGTTCCACCCCTTTAAGATCTCCTCCTGTCTCAAACCCATTTGCTGGTGGAGATTTTGGTAAAGCTGATGTTTTTGATGCTTTGCCAGAGCCATTACGTGAGGCTCTTTGCTCATCACTTTCAAAAGCTGCCTCTTCAAGTCCAGTGCTGGCTACTCTTGCTGATTCAATTACCAAAATTGGACAGTCTATTCTAAATTCGCATCCCCAGCCTCATGTTGCAACTGGTACAGGCTCAGCAAATAGTGTTCCTGAAGCCTCTGCCACTTCTGAAAAAACTCCTCAGCCTCCACATGTGGCCTCCGCTTCCAATGCAAGTGTCCATGCTAGTTCAAGTGGAAGTGCCACTCCGTTAAGCTCTCCTGTCCCAGTGACTCGTCCTAAAATTGCCCTTAGTATGCAATCACCTAATAGGCAATCTCAACATGACATTTCAAGTCGACTGCGTGTTCTGGCTGACTTACATGCCAAGAACTCTTCTGTGGCCAGTCAACAGGCGAGTGCACTTAATTTGCAAGGTCAAGCTCAAGTGCCTGCTAATCTCGCTGGCTTACTAAACAAGAACTCTTCTATTGCCGGGCAACAGGCGGGGGCTGGTAATGCACTTAATTTGCAAGCTCAAGCTGCAGCTTCAAATCAAGCGCGTGCTAATCTCGTTGACTTATTTACCAAGAACTCTTCTATTGCCCGTAAACTGGCGGGGGCTGGAAATGCAATTAGAGGTGGAGTGGCAGGAGTTGTAGGCCGGCCTTCGTTGTTGGACTTGGCTTCTAGTAGCCTACCTAGACATGTAGCGGTTGTCCCTGGCCCTGCCCCTGCCCCTGTTGATCTCAATACCCACCCATGTTTTCCTTCTTCATCTCATTCAACCAATGTAAATAGTGCACCACTTTCGCCAGCTGGCTGTGGATGTAAAATGTGTACTGATGATAGTTTTGCTGGTAAAGGTGAATGTTGTGGGACATCCACAAGTTCTGGAGCTCCTAGAAACAGCTCAACCCAGACTACTGCGAATTGGTTTGGTCCTCCCATCCAATTTCCATTTTCTGGGACAAATACTTTTCATTCAGGGGCATCTCCTATAGGAAACTGTCCAGTTTCTTCCCTTCCTTCCTTTAAAAGGAGCCATAGTCACAATCAGGCTATGAGGGGTATGTTCCACAAGGGAGTCCGCTGTGATGGCTGTGGAGTCTATCCAATAACTGGGTCTCGTTTCAAATCCAAAGTGAAAGAAAATTATGACCTCTGCATCATTTGCTTCAACGAAATGGGTAATAAGGCTGATTATATCAGAATGGACCGTCCTGAATCTGCTTTGGCTGGCCCACGACGCACAAATGAACATACAAAAAAAATTCAAACTATTCCACCATGTCTTAATAGACGTGCACGGCCAAAGCTAGACAGTCGGTTCATTTTGGATGTTAATATCATAGATGGTACAATGATGGCTCCATCTACTGCATTTACAAAGATCTGGCGTATGCGAAACAATGGCACTTCAGTGTGGCCCAAGGGAACTGAACTTGTTTGGATTGGAGGAGATGAGTTTTGTGATTCTACTGCAGTTAAATTAGAGGCTCCTGAGGATGGCGTACCTGTGGGGAATGAGATTGATATTGCAGTTGATTTTAGAGCACCTCAGTTACCTGGTCGATATATATCACACTGGAGGATGGCATCCCCCTCCGGCCATGAATTTGGCCAGTGTGTTTGGGTCCTTATACAGGTTGATGCTTCTGTCATGGACACAACTTCTGATAGCTCTCAAAACCTGAACTTGAATATTCCTCTTGATGTCAGCAGCTCCAAAGGGCCTCAGAGTATAGATATCAATGCTCAACCTATTGAAGATGATGCTTCTTTTCAACAATACAATCCTAGTGCTCCCACTGAACCTGCTGAACCTGTGAATCAAATGGCTGATGTGAATCAAATGGTTGATGAGGAACCAAGGCAGGAGAAGTCAGTAGACGAATTCGCTGAAAATGTAGACGCATTTGTTGACCCTGCTGCCTCACCTCCTGCAACTTCTGCAGTACCTTCATATCTTCCCTATCCGAATGTTGATATTGACATGGCTGAAACAGTGTCCCTGCCTGGTCCTATTCAGCAAACCTCAGCCGCGGATGCCCCGTCTTCATCTATTGGGATTGGTGGAAATAATCCTGTGGAAGAGGCTCTTCTCAAAGAGCTAGATGAAATGGGGTTTAAGCAGGTTGATTTGAACAAAGAGATTTTAAGGAACAATGGCTACAATCTGGAGCAGGCAATAGTTGATCTCTGCGATGAATCTGGATGGGATCCTATCCTTGAAGAGTTAAAGGAGATGGGTTTCGGAGATGATGACAAAAATAAGAAGCTGCTGATGAAAAACAATGGAAGCATCATGGGTGTTGTTATGGATTTAATAAGCAAGGAGTAG 2730 0.4495 MESSLVIKVKYGDTLRRFNAPVAENNRLDLNMAGLRAKICSIFDFAADAKLILTYVDEDGDSVTLVDDEDLLDVMRQKLKFLKIDVKMVNDNVGNSNFGSSGSSTPLRSPPVSNPFAGGDFGKADVFDALPEPLREALCSSLSKAASSSPVLATLADSITKIGQSILNSHPQPHVATGTGSANSVPEASATSEKTPQPPHVASASNASVHASSSGSATPLSSPVPVTRPKIALSMQSPNRQSQHDISSRLRVLADLHAKNSSVASQQASALNLQGQAQVPANLAGLLNKNSSIAGQQAGAGNALNLQAQAAASNQARANLVDLFTKNSSIARKLAGAGNAIRGGVAGVVGRPSLLDLASSSLPRHVAVVPGPAPAPVDLNTHPCFPSSSHSTNVNSAPLSPAGCGCKMCTDDSFAGKGECCGTSTSSGAPRNSSTQTTANWFGPPIQFPFSGTNTFHSGASPIGNCPVSSLPSFKRSHSHNQAMRGMFHKGVRCDGCGVYPITGSRFKSKVKENYDLCIICFNEMGNKADYIRMDRPESALAGPRRTNEHTKKIQTIPPCLNRRARPKLDSRFILDVNIIDGTMMAPSTAFTKIWRMRNNGTSVWPKGTELVWIGGDEFCDSTAVKLEAPEDGVPVGNEIDIAVDFRAPQLPGRYISHWRMASPSGHEFGQCVWVLIQVDASVMDTTSDSSQNLNLNIPLDVSSSKGPQSIDINAQPIEDDASFQQYNPSAPTEPAEPVNQMADVNQMVDEEPRQEKSVDEFAENVDAFVDPAASPPATSAVPSYLPYPNVDIDMAETVSLPGPIQQTSAADAPSSSIGIGGNNPVEEALLKELDEMGFKQVDLNKEILRNNGYNLEQAIVDLCDESGWDPILEELKEMGFGDDDKNKKLLMKNNGSIMGVVMDLISKE* 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2332 909 CDD PB1_Joka2 5 91 - -
Lja4g2332 909 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 825 866 IPR015940 -
Lja4g2332 909 MobiDBLite consensus disorder prediction 168 226 - -
Lja4g2332 909 SUPERFAMILY RING/U-box 478 541 - -
Lja4g2332 909 Gene3D Immunoglobulins 564 683 IPR013783 -
Lja4g2332 909 Gene3D - 867 908 - -
Lja4g2332 909 Pfam Ig-like domain from next to BRCA1 gene 578 679 IPR032350 -
Lja4g2332 909 Gene3D - 819 866 - -
Lja4g2332 909 SMART PB1_new 4 89 IPR000270 GO:0005515
Lja4g2332 909 Gene3D - 481 554 IPR043145 -
Lja4g2332 909 CDD NBR1_like 567 680 IPR032350 -
Lja4g2332 909 Pfam Zinc finger, ZZ type 489 526 IPR000433 GO:0008270
Lja4g2332 909 ProSiteProfiles PB1 domain profile. 4 84 IPR000270 GO:0005515
Lja4g2332 909 ProSiteProfiles Zinc finger ZZ-type profile. 489 539 IPR000433 GO:0008270
Lja4g2332 909 Gene3D - 1 88 - -
Lja4g2332 909 PANTHER PROTEIN JOKA2 1 172 - -
Lja4g2332 909 PANTHER PROTEIN JOKA2 423 909 - -
Lja4g2332 909 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 1 172 - -
Lja4g2332 909 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 423 909 - -
Lja4g2332 909 CDD UBA_NBR1 869 906 - -
Lja4g2332 909 CDD UBA_NBR1 826 864 - -
Lja4g2332 909 SMART zz_5 488 533 IPR000433 GO:0008270
Lja4g2332 909 SUPERFAMILY CAD & PB1 domains 4 77 - -
Lja4g2332 909 SUPERFAMILY UBA-like 869 906 IPR009060 GO:0005515
Lja4g2332 909 MobiDBLite consensus disorder prediction 168 223 - -
Lja4g2332 909 Pfam PB1 domain 6 77 IPR000270 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2332 K17987 - gmx:100778692 786.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2332 4 25824401 25828500 Lja4g2332 4 25824401 25828500 ECH