Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2330 ATGGATCCCAACCCAGGAACCTTCCCCATTCTCTCCTACGTCATGTCCCGCCTCCCTTCCTTCAGCCCCAGCACCACCACCACCACCACTTCCACTTCCAATTCCCAATCCGACGTCGAACAACCGCTATCACCACCCTCAGACCCTTCGTCCTCTTCCTCAATCATCGGCCAAATGCCGAATCTGACAGACCCGAAGCTTCTGGCGGCAATGACCCGCGCAATCTCCGACGTCTCGCAGGCCAGAGCCGTCCTGAAACTGATCGGCGAGCGGCCAACCCACGAGGAGGTCGACGACTCCAGGGCCAAACTGGCGGACCTCGACGCCCATCTTTCCCGCCAGATGGAAGAGATCGTCGGCCTCCCCAAGCCGCCCGAGGTAAACGACGACCAATGGCGGGTTCACCTCGCCGAGAGGGAGACGCAGTGCAGGGATTCCGTGGAGAAGGATAGGCGCGTGTTCAAGTCGCTGTTGCAGCTGGAGGAGATGCATGACGCTTACGCGAAGCTTCTCAAGGACGCGGAAAAGCGGCTTGTGAAGATTTACGAGGGCGGCGAGGATGAGAACGACGGCGACAATGATGGTGGCGCTGCGGCGGTGGCTGTGGAAGAGGAACAGGTTGCGGGGATGCTGCAGGAGGCTTGTGGGAAAGGGGTGGAGCATGTGGATCTTTCCGGGCAGCACCTGAGGAAGCTTCCTGAAGCATTTGGCCGCATTATCCCTTCCTTGGTGGTGCTCAATCTCTCCACCAATCAGCTTTCGGTGATTCCTGACTCAATAAGTGGATTGCAAAATCTTGAGGAGCTTAATGTGTCTACAAATGTTTTGGAATCACTGCCAGATTCAATTGGCTTGTTACAGAAGTTGAAAATCCTCAATGTCTCTGGAAATAAGCTGAGTGCCCTTCCTGATTCAATCAGTCAGTGCAGGTCTTTGGTGGAGCTAGATGCTAGCTTTAACAGTCTGCAATATTTGCCAACAAACATTGGATTTGAGTTACAGAGTTTAAAGAAGCTCTTGATTCAGCTAAACAAGATACGATCCCTTCCCTCATCTATTTGTGAGATGAAGTCCCTCCGCTATCTGGATGCTCACTTCAATGAGCTACATGGGCTTCCTAATGCCATTGGGAAATTGAGTCATCTTGAAGTTCTTAACCTGAGCAGCAACTTCAGTGATCTTCAAGAACTTCCAGAAACATTTGGTGATCTGAGTAGCCTCAGGGAATTGGATCTCAGCAACAATCAAATTCATGCACTTCCTGATACATTTGGCCGCCTTGATAATTTGACCAAGCTGAACTTGGAGCAGAACCCTCTTGAAGTGCCACCTATGGAGATTGTAAATCATGGTGTCCAAGCCATAAAGTCATTCATGGCCAAGAGGTGGATTGAAATATTGGCAGAGGAAGATAGGAAACACACACAGGAATTTCCAGAAGAAGGGCAGAATGGGTGGCTAACTCGAAGTACCTCCTGGTTAAAGAATGTTTCTGTAAATGTAACTGAGTATCTCGAAACTACCGTTATGTCCCCCAAAGCTCCCAGAACTCCCAGAGATGCTTATCTTAATCAGCAGCTATGA 1584 0.5057 MDPNPGTFPILSYVMSRLPSFSPSTTTTTTSTSNSQSDVEQPLSPPSDPSSSSSIIGQMPNLTDPKLLAAMTRAISDVSQARAVLKLIGERPTHEEVDDSRAKLADLDAHLSRQMEEIVGLPKPPEVNDDQWRVHLAERETQCRDSVEKDRRVFKSLLQLEEMHDAYAKLLKDAEKRLVKIYEGGEDENDGDNDGGAAAVAVEEEQVAGMLQEACGKGVEHVDLSGQHLRKLPEAFGRIIPSLVVLNLSTNQLSVIPDSISGLQNLEELNVSTNVLESLPDSIGLLQKLKILNVSGNKLSALPDSISQCRSLVELDASFNSLQYLPTNIGFELQSLKKLLIQLNKIRSLPSSICEMKSLRYLDAHFNELHGLPNAIGKLSHLEVLNLSSNFSDLQELPETFGDLSSLRELDLSNNQIHALPDTFGRLDNLTKLNLEQNPLEVPPMEIVNHGVQAIKSFMAKRWIEILAEEDRKHTQEFPEEGQNGWLTRSTSWLKNVSVNVTEYLETTVMSPKAPRTPRDAYLNQQL* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2330 527 PANTHER LEUCINE-RICH REPEAT-CONTAINING 19 509 - -
Lja4g2330 527 ProSiteProfiles Leucine-rich repeat profile. 265 286 IPR001611 GO:0005515
Lja4g2330 527 SMART LRR_bac_2 379 400 - -
Lja4g2330 527 SMART LRR_bac_2 309 328 - -
Lja4g2330 527 SMART LRR_bac_2 356 375 - -
Lja4g2330 527 SMART LRR_bac_2 404 423 - -
Lja4g2330 527 SMART LRR_bac_2 263 282 - -
Lja4g2330 527 SMART LRR_bac_2 333 352 - -
Lja4g2330 527 SMART LRR_bac_2 240 259 - -
Lja4g2330 527 SMART LRR_bac_2 286 305 - -
Lja4g2330 527 Pfam Leucine rich repeat 380 440 IPR001611 GO:0005515
Lja4g2330 527 Pfam Leucine rich repeat 219 276 IPR001611 GO:0005515
Lja4g2330 527 SUPERFAMILY L domain-like 215 445 - -
Lja4g2330 527 ProSiteProfiles Leucine-rich repeat profile. 242 263 IPR001611 GO:0005515
Lja4g2330 527 Gene3D Ribonuclease Inhibitor 197 325 IPR032675 -
Lja4g2330 527 Gene3D Ribonuclease Inhibitor 330 460 IPR032675 -
Lja4g2330 527 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 1 19 509 - -
Lja4g2330 527 MobiDBLite consensus disorder prediction 19 60 - -
Lja4g2330 527 ProSiteProfiles Leucine-rich repeat profile. 406 427 IPR001611 GO:0005515
Lja4g2330 527 SMART LRR_typ_2 310 332 IPR003591 -
Lja4g2330 527 SMART LRR_typ_2 240 262 IPR003591 -
Lja4g2330 527 SMART LRR_typ_2 286 309 IPR003591 -
Lja4g2330 527 SMART LRR_typ_2 427 450 IPR003591 -
Lja4g2330 527 SMART LRR_typ_2 404 426 IPR003591 -
Lja4g2330 527 SMART LRR_typ_2 333 356 IPR003591 -
Lja4g2330 527 SMART LRR_typ_2 379 403 IPR003591 -
Lja4g2330 527 SMART LRR_typ_2 263 285 IPR003591 -
Lja4g2330 527 Coils Coil 157 177 - -
Lja4g2330 527 ProSiteProfiles Leucine-rich repeat profile. 288 309 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2330 Lja-Chr4 25808832 25811710 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2330 222 481 Receptor kinase-like Gene Family AT5G56040 31.849 2.08e-18 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2330 - - gmx:100782818 711.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2330 4 25808832 25811710 Lja4g2330 4 25808832 25811710 ECH