Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2305 ATGTCATCAACAGTGAGAGATCACAGATTAGTTCGCCGGATAACAAACCTTCCGCAAAGCATAATGGGAGGAATTTCAAGGGCAGTGGGTGATGGTATGGGCTTTGTAGGAAGAGGAAGAAGAAGAAACCAACAAACATATTTTCCACTGCACCCTCAACTACCTCTGCTGCAGCCACAAGATTCCATAGCAGTTCCAGAGGAGTGGGCCTTTTTAGACAATTTTGAGCAGCAATATGGCACCAAACACCCATTCTTTTATGCTTGCCGCTTCACAGAAGCCATGAGGTTAGCACAGCAAGATAAGAAGTTCATGTTCATGTACCTCCACTCCCCAGACCACCCTTTTACAAACGCTTTCTGCAAGGAAACCCTGTGTTCTGAGCTAGTAGTCCAGTTTCTTGACGTGAATTTTGTTTGCTGGGGAGCACTTGCAGATAGAGGAGAGGGTCTGCAAATGGTTGCAACACTAAGACCTGAAAGCTTTCCCTGTTGTGCTCTCATAAGCCAAGCTCCTGGTGATAGCATAGTAGTGCTGCAACAGCTAGAGGTACCAGTTTCACCAGCTGAGCTAGTGGAGATTCTACAAAGAACACTGGAAGAGCAAGGGGTGGCTTTCGGAAGTGATAGAGCAAAGAAGGAAGAAAAAATCCTAGCAGACCGTAGGCTTAGAGAAGAACAAGATGCTGCATATCTTGCAGCTTTGCAAATAGACAGGGAAAAAGAGAGACTGAAAAATTTACCTTCAAGGGAGAGAGTTCACAAGCCAGTGGAAGGTCAGAACACCATAAATTATGGGAAGCTGAGGAACAATTCTGTTGATATCAGTAAACAGCATTACAAAACAAATGAGTCCAGTAGTGAAAAACAAGACAAGGGAATTGCCGCTAGGGGAAGTGGGTCTCAGGCAACACAGATACTCATAAGGTTTCCAAATGGGGAAAGAAGAGAACATACTTTCTTGAGCACAGACAAAATCCAGTCCATTTTCTCATACATTGATTCATTAGGTTTGCTAGGGATTGAGAACTATAGATTGATATCAAACTTCCCAAGAAAAGCTTATGGTGTTGATCAAATTAGAATGACTCTCAAAGATGCTGGCTTGTATCCTAAAGCTAGCTTGTTCCTGGAGATTTTGTAA 1143 0.4331 MSSTVRDHRLVRRITNLPQSIMGGISRAVGDGMGFVGRGRRRNQQTYFPLHPQLPLLQPQDSIAVPEEWAFLDNFEQQYGTKHPFFYACRFTEAMRLAQQDKKFMFMYLHSPDHPFTNAFCKETLCSELVVQFLDVNFVCWGALADRGEGLQMVATLRPESFPCCALISQAPGDSIVVLQQLEVPVSPAELVEILQRTLEEQGVAFGSDRAKKEEKILADRRLREEQDAAYLAALQIDREKERLKNLPSRERVHKPVEGQNTINYGKLRNNSVDISKQHYKTNESSSEKQDKGIAARGSGSQATQILIRFPNGERREHTFLSTDKIQSIFSYIDSLGLLGIENYRLISNFPRKAYGVDQIRMTLKDAGLYPKASLFLEIL* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2305 380 SMART 45neu3 70 196 IPR006577 -
Lja4g2305 380 Pfam UBX domain 301 378 IPR001012 GO:0005515
Lja4g2305 380 SMART ubx_3 295 379 IPR001012 GO:0005515
Lja4g2305 380 PANTHER UBIQUITIN-ASSOCIATED (UBA) PROTEIN-RELATED 8 380 - -
Lja4g2305 380 SUPERFAMILY Ubiquitin-like 297 378 IPR029071 -
Lja4g2305 380 MobiDBLite consensus disorder prediction 279 300 - -
Lja4g2305 380 PANTHER FAS-ASSOCIATED PROTEIN 8 380 - -
Lja4g2305 380 CDD UBX 306 378 - -
Lja4g2305 380 CDD UAS 91 201 - -
Lja4g2305 380 Gene3D Glutaredoxin 66 205 - -
Lja4g2305 380 ProSiteProfiles UBX domain profile. 299 377 IPR001012 GO:0005515
Lja4g2305 380 Gene3D - 299 379 - -
Lja4g2305 380 SUPERFAMILY Thioredoxin-like 65 204 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2305 Lja-Chr4 25407422 25409627 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2305 K18726 - gmx:100775212 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2305 4 25407422 25409627 Lja4g2305 4 25407422 25409627 ECH