Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2293 ATGGCGAACGAAAACGACGCCGGCGGCGAAGCCCTACGGCGCGTGACTGCGACGGAACCACCAACATGGCTGGCACCGAACCCATCGCTATCTGAAACCGCTCGTACTGCATCGCAGTACCTGTTCTCCACCCTCAGACCGTTCACCCCGAAATCGCCATTGGACCAACTCCTTGTTGATGGCTTCGACGTAGAGCAGATATGGCAGCAAATCGACCTTCAATCACAGCCTCTTTTGTCCACCCTCCGTCGCCGAGTGAACCATCTGGCCCAAAACCCTGAAGAGATTTCGCAGCTGATGGTCCCTTCGGGTGCTGGGAACGAGGTGGAGACAGAGGGGCGAGAAGAGTGGGGCGAAGAAATTGACGGTTTGGATGAGGAATTGGATGATGCTGATGATGATGATGATGATGAAGAGATGGTAGAGATGGAGGAGGGAGAAGATGAGGAAGAAGAAGAAGAAGAAGAAGATGATGATGAGGAGGAGGAGGAGGAGGAGGAAGATGATGAAGAGATGGAGGATGAAGACGAGGAGGGAGGAGGGAGCGAAGAGGAGGACGGTGAAGGTGGTGGCATTGAGGATGAATTCTTGAAAATAGGTGAATTGAACAAGTACTTGCAGAAGGAGGAAGAGAATTTCGAGAACGGAGATGAAGACAGGAAAGGTGAGGATGAAGATGAAGATGAAGATGAAGATGATGATGAAGATGATGATGATGAGTATGGTGGTTTTGGAATGGATGATGAAGATGGAGAAGCAGTGGGCATGAAAAAAGCAAAAAAAGCAAAAGATCCAATGTATGAAGACTTTTTTGGAGGTAAAAAGGACGCACAGAAGAAAAGACCTTCTACCCATGAAAAGGAACTGGAAAAAATTCAATCAAAGATAGAGCAGATGGAGCAAGCTAACATAGAGCCAAAAACTTGGACTATGCACGGCGAGGTAACTGCTGCAAAGAGACCCAAGAATAGTGCATTGGAAGTTGATCTTGACTTTGAGCACAATGTGAGACCTGCTCCCGTAATCACTGAGGAGGTGACAGCTTCAATTGAGGATATGATCAAGAAAAGGATTCTTGAGGGACATTTTAACGATGTTGAAAGGGCTTCTAAACTGCCATCTAAAGCGCCCCGGGAATTGAAGGAGTTGGATGACAATAAAAGCAAGCAGGGTCTTGCAGAACTTTATGAGCAAGAATATGTTCAGAAGAAAGACCCCAGTTCGGCACCATTGTCATTCAAAGATGAACTAAAGAATGAGGCAGACATGCTGTTTAAGAGACTCTGTCTGAAGCTGGATGCCCTTTCTCATTTTAACTTTGCTCCAAAACCTGTTATCGAGGATATGTCTTTTCAAGCTAACGTGCCTGCTCTGGCAATGGAAGAAATTGCTCCTGTGGCTGTTTCAGATGCTGCTTTTCTGGCTCCTGAAGAGGTCTTTGATGGTAAGGGTGATGTTAAGGAAGAAGGCGAGCTGACAAAGGAAGAAAGGAAAAGGAGGAGAGCTAATAAGAAAAGAAAATTTAAAGCTGAGGCAGTAAAAAGGCCAGCAAAGAAGGTGCCAGAGGGCCCATCTCCTATCCAAGTAAATGGCTAA 1596 0.4649 MANENDAGGEALRRVTATEPPTWLAPNPSLSETARTASQYLFSTLRPFTPKSPLDQLLVDGFDVEQIWQQIDLQSQPLLSTLRRRVNHLAQNPEEISQLMVPSGAGNEVETEGREEWGEEIDGLDEELDDADDDDDDEEMVEMEEGEDEEEEEEEEDDDEEEEEEEEDDEEMEDEDEEGGGSEEEDGEGGGIEDEFLKIGELNKYLQKEEENFENGDEDRKGEDEDEDEDEDDDEDDDDEYGGFGMDDEDGEAVGMKKAKKAKDPMYEDFFGGKKDAQKKRPSTHEKELEKIQSKIEQMEQANIEPKTWTMHGEVTAAKRPKNSALEVDLDFEHNVRPAPVITEEVTASIEDMIKKRILEGHFNDVERASKLPSKAPRELKELDDNKSKQGLAELYEQEYVQKKDPSSAPLSFKDELKNEADMLFKRLCLKLDALSHFNFAPKPVIEDMSFQANVPALAMEEIAPVAVSDAAFLAPEEVFDGKGDVKEEGELTKEERKRRRANKKRKFKAEAVKRPAKKVPEGPSPIQVNG* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2293 531 MobiDBLite consensus disorder prediction 113 191 - -
Lja4g2293 531 MobiDBLite consensus disorder prediction 192 215 - -
Lja4g2293 531 MobiDBLite consensus disorder prediction 499 513 - -
Lja4g2293 531 PIRSF snoRNP_Mpp10 19 282 IPR012173 GO:0005634|GO:0005732|GO:0006364|GO:0034457
Lja4g2293 531 PIRSF snoRNP_Mpp10 246 523 IPR012173 GO:0005634|GO:0005732|GO:0006364|GO:0034457
Lja4g2293 531 Pfam Mpp10 protein 277 512 IPR012173 GO:0005634|GO:0005732|GO:0006364|GO:0034457
Lja4g2293 531 Pfam Mpp10 protein 50 280 IPR012173 GO:0005634|GO:0005732|GO:0006364|GO:0034457
Lja4g2293 531 MobiDBLite consensus disorder prediction 250 291 - -
Lja4g2293 531 MobiDBLite consensus disorder prediction 484 531 - -
Lja4g2293 531 PANTHER U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN MPP10 4 519 IPR012173 GO:0005634|GO:0005732|GO:0006364|GO:0034457
Lja4g2293 531 Coils Coil 114 134 - -
Lja4g2293 531 Coils Coil 143 178 - -
Lja4g2293 531 Coils Coil 285 305 - -
Lja4g2293 531 MobiDBLite consensus disorder prediction 484 498 - -
Lja4g2293 531 MobiDBLite consensus disorder prediction 216 247 - -
Lja4g2293 531 MobiDBLite consensus disorder prediction 1 29 - -
Lja4g2293 531 MobiDBLite consensus disorder prediction 99 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2293 Lja-Chr4 25302321 25306391 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2293 K14559 - gmx:100781093 463.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2293 4 25302321 25306391 Lja4g2293 4 25302321 25306391 ECH