Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2251 ATGGGCAAAGAAGCTATTGTTGTTTCCCAATATCTTGATGAGTCAAAAGTGCTAGACGATAATTTTGATCATAAAATCCAAAGTCTTATAACATTAGGACCTGATCATGGAGAGGAGAATCATAAAGGAGGTGCTAATGGCACATATGCGGCTCAAGGGTGGTATGCTGATGAACCGTGGCATGGAGAAGCCCACATGTATAAGATGGAAAAGATCCTATTCCAAGGGAAATCAGAATTTCAAGAGCTTCTTGTATTTGAGTCATCCAATCATGGCAAGGTTGCAATTCTTGATGGCTATATGCAGCTTACAGAGAGTGACGAATTTGCTTACCAAGAAATGCTCACTCACCTTGCACTCTGCTCCATTCCAAATCCAAAGAAGGTGTTGCTCGTGGGAGGGGGAGATGGTGGAATCCTTAGAGAAATATCCCGCCACGCATCTGTTGAGCATATTGATATCTGTGAACTAGACAAAATGGTGATCGATGTGAGCTTACAAGAAGTATTTCCCAGATATTGCAATTGGATTGGATACAAGGATCCTCGAGTGCATGTTCATATTGGCGATGGAATTAAGTTCATCAATTGTACTCCTGAGGGAACTTATGATGCGATTATACTGGATGCTTTCAATCAAATGGGACCTATTGCAAAAGAGCTTGCAGATAATTGCTTCTTAGAATCAGTAGCTAAGGCTCTTCGACCTGGTGGAGTGCTTTCTACTCCCGCAGACAGCTTGTGGCGTAAGAACTTTGTCATTGCAGATACCATAGCAAATTGCAAGAAGATATTCAAAGGCTCAGTTAACTATGCTTGGACAACAGTCCCTGCATATGCAAGTGGGGTGATTGGATTCATGCTTTGCTCCACAGAGGGGCCCCAAGTCAACTTCAAATACCCAATAAATCCACTGAATCCAGAGAATTATGGTGTAGCAAAGGGACCTCCAAAGTTCTATAACTCAGAGATCCATGCTGCTGCATTCTGTCTGCCTTCTTTTGTTGACAAGGCTATAGATCCAAAAATGAATTTCTATTGA 1041 0.4198 MGKEAIVVSQYLDESKVLDDNFDHKIQSLITLGPDHGEENHKGGANGTYAAQGWYADEPWHGEAHMYKMEKILFQGKSEFQELLVFESSNHGKVAILDGYMQLTESDEFAYQEMLTHLALCSIPNPKKVLLVGGGDGGILREISRHASVEHIDICELDKMVIDVSLQEVFPRYCNWIGYKDPRVHVHIGDGIKFINCTPEGTYDAIILDAFNQMGPIAKELADNCFLESVAKALRPGGVLSTPADSLWRKNFVIADTIANCKKIFKGSVNYAWTTVPAYASGVIGFMLCSTEGPQVNFKYPINPLNPENYGVAKGPPKFYNSEIHAAAFCLPSFVDKAIDPKMNFY* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2251 346 Hamap Polyamine aminopropyltransferase [speE]. 53 340 IPR001045 GO:0003824
Lja4g2251 346 CDD AdoMet_MTases 150 240 - -
Lja4g2251 346 PANTHER SPERMIDINE/SPERMINE SYNTHASE 1 339 IPR001045 GO:0003824
Lja4g2251 346 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 53 340 IPR029063 -
Lja4g2251 346 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 52 291 IPR030374 -
Lja4g2251 346 Pfam Spermidine synthase tetramerisation domain 53 105 IPR035246 -
Lja4g2251 346 Gene3D Vaccinia Virus protein VP39 105 344 IPR029063 -
Lja4g2251 346 PANTHER SYNTHASE 1, PUTATIVE-RELATED 1 339 - -
Lja4g2251 346 Pfam Spermine/spermidine synthase domain 108 299 - -
Lja4g2251 346 Gene3D Spermidine synthase, tetramerisation domain 36 104 IPR037163 -
Lja4g2251 346 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 129 142 IPR030373 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2251 Lja-Chr4 24723779 24729614 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2251 K00797 - gmx:100788406 514.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2251 4 24723779 24729614 Lja4g2251 4 24723779 24729614 ECH