Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2244 ATGGGGGTTCCGACTGGTAAACCCACCGTCCGCATCTTCAACATTCCCCAATCCGCCACCGCCAAGGACCTCCTCGCCTTCCTCAAGTCCACATTTGGTCCCTCCTCCATCTACGCCCTCGAAATCTTTTCCGATTACTCCAACTGGAAGTCTCGCGGCTCCGGCCGCGTCCAGTTCGAGGACCTCGCCACCAAGTCCCGCGCCCTCTCTCTCGCCGAATCCCAGAAGCTCATCTTCAAGTCCCACTTCCTCCGCCTCTCCGAAAACTCCGATGATATCATCCCCCGGCCTCCGCTCCCCCAACACCGCCTCAACAACACCATCCTCAATGCAGGCTTCACCGTCGGACCTGACGATTTTGTTATTCTCGACACCTGGGATGGTGTTCAGGGGTGGATCATGCCAGAACGGAGGAAACTTGAATTCTGGGTCTGGTTCCAAGGGGAGTGTTACAAGCTTGAAATCCCTTTTGAAGATATTTTGGAGACTGTTGGCTATGCTTCTGGTGATGATGGTAAACCCCCAGATGCCCTCATCTTGAAGCTGAAATATGGGCCAAGGATATATCAGAGGAAATCAGGGCCAGATATAGCCTCCAAGTTTAAGGCTGATAGGTACCATTTCTGTAAGGATGATATCGAGTTTCTTTGGGTGCGAACAACAGACTTCTCGCCCATCAAGTCGATTGGGCACTCCACATCGTTTTTTTGGGAAATTGACGAAGAATCATCTTCTTTGGATGTTTTTCAAAGTTTTCCATTGTACAGAGTAAGTCTGAAAGATCTAAATCTGGATCAGAAATATTCATGCTCTGCCACAGAAACAGTTCCGCTGGTGAAATGTGGTCCTGGTTCCAAGCTTCCTTATGAGGATCTTTTCCAATTGAATTGCCTTGTCCATACTCAGAAAATCAGTCTTGCTTCAGTGAATGATGAATTGATTGCCTTGTTTGGAAGCTTAACTGATGAAACCAAAGCCATGGTTTTTCAGAAATTGCACAAACTGAATTCAACTTGTTATGATCCCTTAGAATTTGTGAACACTCAATTGCACGTGCTGAGCAGCAGAAGAAAAAGGCATCTTCCATCAGCGCAGAAAAGGTTGGCAGATAACAACATAATGAGTTGTCATAGAGCACTGATTACCCCAACGAAGATTTATTGCCTTGGACCGGAGCTTGAAACCTCAAATCATGTGGTAAAGCATTTTGCACAGTATGCTTCGGATTTCATGAGGATTACTTTTGTTGAAGAGGATTGGAGTAAGCTTCCATCTAATGCGGTATCAACTACTGTACACAAGGGAATCTTCTCAAAGCCTTTTAAAACTGAAATATATAAGCGGATATTGACTATTCTTCGAGATGGGATTGTGATTGGATCAAAAAGATTTGAGTTTCTAGCCTTCTCTGCTAGTCAACTGCGGTCAAATTCCGTTTGGGTATTTGCTTCTAATGACCATGTGAAAGCAGCAGATATCAGAGAATGGATGGGATGTTTCAACAACATTCGTAGTGTTTCTAAATGTGCAGCAAGGATGGGTCAGCTGTTCAGTTCTTCCAAGCAAACTTTTGAAGTCCTTCCTCAAGAAGTGGAAATAATTCCAGATATTGAAGTGAACTCTGATGGTGTAGACTACTGTTTCTCTGATGGCATTGGAAAAATTTCCCTATCTTTTGCAAGGCAAGTTGCTCAAAAGTTAAAATTGGATCAGAGTCGAATTCCATCAGCATTTCAAATTCGGTATGGTGGATATAAAGGTGTTATTGCTCTGGATCGCCATTCCTTTAGGAAGTTATCATTGCGCGGCAGTATGCTTAAGTTTGAATCCGACAACAGGATGCTCTGTGTTACTAAATGGAGTGAGTCAATGCCTTGCTTTCTCAATCGAGAGATTATATCCCTGCTGTCGACCTTAGGGGTAAAAGATGAGGCGCTTTTGGCTATGCAACAGGAACAGTTGCATTTGCTTGGAAGGATGTTGACTGATAGGGAGGCAGCACTGGATGTTCTGGAAAGTTTGAGTGGAGTTGATTCAAAAAGCATTCTGGTAAAGATGTTGCATCAGTTTTATGAACCAAACAGTGAGCCTTATCTATCGATGATGCTTAAGGCTCACTATACGGAGCAATTATCTGATTTGAAAAGTAGATGCCGTATATGTGTTCCCAAGGGTCGACTCTTAGTAGGTTGCTTGGATGAAACTGGTATTTTAAATTATGGCCAAGTGTTTGTTCGCGTTACTGTAAATAAAACTATGGAAAATTCTGGAGATGATAGCTTAAGGAAAGTGGATGGTGATGATAGCACACGCATAATAGTGGGGAAGGTGATAGTCACCAAAAATCCTTGTCTTCACCCAGGAGACGTCAGAGTCCTTGATGCTATCTACCATGAAGAATTGGAGGAAAATGGTATGAGGGATTGCCTTGTATTTCCGCAAAAAGGACATAGGCCTCATCCAAATGAATGCTCGGGAGGTGATCTTGATGGAGATTTGTTTTTCATTAGCTGGGACAAAGATCTGATCCCGTGTAAAACCGAGGAACCAATGGACTACACAGCAAGGAGGCCTCGGATAATGGACCATATGGTAACACTAGAGGAAATCCAACAATTTTTTGTTGACTACATGATCAATGATACTCTGGGCGCTATCTCCACCGCACATCTAGTTCATGCTGACCGTGAACCAGATAAAGCCAGGAGCTCAAAATGTCTGGAGCTGGCACAGCTTCATTCCATGGCTGTTGACTTTGCAAAGACCGGTGCGCCTGCTGCGATGCCTAGAGTTTTGAAACCAAGAGTTTTTCCAGATTTCATGGAGAGGTTTGAAAAGCCTATGTATATCTCCAACGGGGTGCTGGGAAAACTTTACCGTGCCTTAGTTGAGTCAAAATTGCAGGCAAGTTCTAACGTTGTCTGGTCAGAGAAGCTTGCTGAAGACGCATATGATCTTAATCTTGAAGCTAATGGTTTTGAGGCCTTCCTTGAAACTGCATCAAGTCACAAAGAAATGTATGCAGAGAAGATGACCGCTTTAATGAAGTTCTATGGTGCAGAGACTGAGGATGAACTGCTAACCGGTAACCTGCAAAACCGAGCTTCGTATTTGCAGCGTGATAACCGGAGGTATACAGATATGAAGGATCGGATTCTGATCTCGGTGAAGGATCTTCAGCGTGAAGCCAAAGAATGGTTTGAAGCTGATTGTCAACAGCATGAATATCAAGCTATGGCGTCTGCATGGTATCATGTGACCTATCACCCAAAATATTACCATGAAAGCTCCAGTTTCTTGAGCTTTCCGTGGATAGTTGGTGACATTTTGTTGCACATTAAGTCTGTAAACAGTAAAGTACTCAGTTGA 3369 0.4384 MGVPTGKPTVRIFNIPQSATAKDLLAFLKSTFGPSSIYALEIFSDYSNWKSRGSGRVQFEDLATKSRALSLAESQKLIFKSHFLRLSENSDDIIPRPPLPQHRLNNTILNAGFTVGPDDFVILDTWDGVQGWIMPERRKLEFWVWFQGECYKLEIPFEDILETVGYASGDDGKPPDALILKLKYGPRIYQRKSGPDIASKFKADRYHFCKDDIEFLWVRTTDFSPIKSIGHSTSFFWEIDEESSSLDVFQSFPLYRVSLKDLNLDQKYSCSATETVPLVKCGPGSKLPYEDLFQLNCLVHTQKISLASVNDELIALFGSLTDETKAMVFQKLHKLNSTCYDPLEFVNTQLHVLSSRRKRHLPSAQKRLADNNIMSCHRALITPTKIYCLGPELETSNHVVKHFAQYASDFMRITFVEEDWSKLPSNAVSTTVHKGIFSKPFKTEIYKRILTILRDGIVIGSKRFEFLAFSASQLRSNSVWVFASNDHVKAADIREWMGCFNNIRSVSKCAARMGQLFSSSKQTFEVLPQEVEIIPDIEVNSDGVDYCFSDGIGKISLSFARQVAQKLKLDQSRIPSAFQIRYGGYKGVIALDRHSFRKLSLRGSMLKFESDNRMLCVTKWSESMPCFLNREIISLLSTLGVKDEALLAMQQEQLHLLGRMLTDREAALDVLESLSGVDSKSILVKMLHQFYEPNSEPYLSMMLKAHYTEQLSDLKSRCRICVPKGRLLVGCLDETGILNYGQVFVRVTVNKTMENSGDDSLRKVDGDDSTRIIVGKVIVTKNPCLHPGDVRVLDAIYHEELEENGMRDCLVFPQKGHRPHPNECSGGDLDGDLFFISWDKDLIPCKTEEPMDYTARRPRIMDHMVTLEEIQQFFVDYMINDTLGAISTAHLVHADREPDKARSSKCLELAQLHSMAVDFAKTGAPAAMPRVLKPRVFPDFMERFEKPMYISNGVLGKLYRALVESKLQASSNVVWSEKLAEDAYDLNLEANGFEAFLETASSHKEMYAEKMTALMKFYGAETEDELLTGNLQNRASYLQRDNRRYTDMKDRILISVKDLQREAKEWFEADCQQHEYQAMASAWYHVTYHPKYYHESSSFLSFPWIVGDILLHIKSVNSKVLS* 1123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2244 1122 Pfam RNA dependent RNA polymerase 381 961 IPR007855 GO:0003968
Lja4g2244 1122 SUPERFAMILY RNA-binding domain, RBD 7 74 IPR035979 GO:0003676
Lja4g2244 1122 PANTHER RNA-DEPENDENT RNA POLYMERASE 2 5 1119 - -
Lja4g2244 1122 PANTHER RNA-DEPENDENT RNA POLYMERASE 5 1119 IPR007855 GO:0003968
Lja4g2244 1122 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 123 183 - -
Lja4g2244 1122 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 91 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2244 Lja-Chr4 24639980 24645005 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2244 K11699 - gmx:100808274 1748.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2244 4 24639980 24645005 Lja4g2244 4 24639980 24645005 ECH