Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2241 ATGTCATCTCCAAGCAAGAGAAGAGAAATGGATGTAATGAAATTGATGATGAGTGATTATACAGTGGAGACGATAAATGATGGACTCAGTGAATTCAATGTGGAGTTTCATGGCCCAAAAGAAAGCCTTTATGAAGGTGGAGTCTGGAAAGTTCGTGTTGAGCTTCCTGATGCATATCCCTTCAAATCTCCCTCTATCGGCTTTGTGAACAAAATATTCCACCCAAATGTTGATGAGTTGTCTGGCTCTGTGTGCTTGGATGTCATTAACCAAAATTGGAGTCCAATGTTCGATCTTCTAAATGTGTTTGAAGTTTTTCTTCCACAACTCTTGCTTTACCCGAATGCTTCAGATCCTCTCAATGGTGATGCAGCATCGTTGATGATGAAGGACAAAAAGCTGTACGACCAAAAAGTTAAAGAGTACTGTGAGCGGTATGCTAAGAAGGAAAACATTGCCAATTCTACTGCTGATGATGAGAGTGAAGATGAGGAGGACATCAGTGAAGAAGAAGAAAGACAATCCAGTGATGATGAAATTCCAGGTCATGCTGATCCTTAA 561 0.4046 MSSPSKRREMDVMKLMMSDYTVETINDGLSEFNVEFHGPKESLYEGGVWKVRVELPDAYPFKSPSIGFVNKIFHPNVDELSGSVCLDVINQNWSPMFDLLNVFEVFLPQLLLYPNASDPLNGDAASLMMKDKKLYDQKVKEYCERYAKKENIANSTADDESEDEEDISEEEERQSSDDEIPGHADP* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2241 186 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Lja4g2241 186 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 186 - -
Lja4g2241 186 MobiDBLite consensus disorder prediction 157 175 - -
Lja4g2241 186 CDD UBCc 7 143 IPR000608 -
Lja4g2241 186 SMART ubc_7 4 148 - -
Lja4g2241 186 Gene3D Ubiquitin Conjugating Enzyme 1 162 IPR016135 -
Lja4g2241 186 MobiDBLite consensus disorder prediction 150 186 - -
Lja4g2241 186 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-23 KDA-LIKE 3 186 - -
Lja4g2241 186 SUPERFAMILY UBC-like 4 150 IPR016135 -
Lja4g2241 186 Pfam Ubiquitin-conjugating enzyme 11 142 IPR000608 -
Lja4g2241 186 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2241 Lja-Chr4 24619036 24625855 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2241 4 117 Miscellaneous Gene Families AT3G17000 24.590 2.87e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2241 K10576 - gmx:100790685 335.109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2241 4 24619036 24625855 Lja4g2241 4 24619036 24625855 ECH