Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2238 ATGGGAGGAGGAAGCAACAACAAACGTAAGAGAGGCCGCAAACCCAAAAACCCCGCCCCCGAAACCCTAGACATCCCCGCCACCACCACCACCGCCGCCGCCAACAACAACAACAGCATGGACGACGTCTTCTCAAACGGCTCCGTCGACCTCATCGACGACACCTCCTCCCCACACCTCCGCCGCCGCCGTGGCCGACCCCGGAAGACCCCTGCTATACCCGATAAGCCCCCCGGGCGCCGCCTCCCCCGTCACGTCGATGGTAGTGCCGTCCCGGCTGAGGTTGGGGTTGCAACCATCATGGAACCGGACCCGGTGTTTGAGGGGGTGGCTGCGAGAGTGTTGCCGGCGATGGACCCGGTGGTGAAGGTGTTCTGTGTGCATACCGAGCCGAATTTCTCGCTGCCGTGGCAGAGGAAGAGGCAGTACAGCTCCAGTAGCAGTGGGTTTGTGATTGCTGGGAGGAGGGTTCTCACCAATGCGCATTCTGTAGAGCATTACACTCAGGTTAAGCTAAAAAAGCGTGGCTCTGATACCAAGTACTTGGCTACTGTTCTTGCCATTGGAACAGAGTGTGACATTGCCCTGCTTACAGTTGATGATGATGAGTTCTGGCAAGGGATGTCTCCTGTAGAGTTTGGGGATTTGCCCACACTTCAAGATGCAGTCACTGTTGTGGGCTACCCAATTGGCGGAGACACCATCTCTGTTACCAGCGGTGTTGTTTCACGCATTGAGATTCTATCGTATGTCCATGGTTCCACTGAGCTTCTAGGTTTACAGATAGATGCTGCTATAAATTCTGGCAATTCTGGTGGGCCTGCATTTAATGATAAAGGAAACTGTGTGGGGATTGCATTTCAGTCACTTAAGCATGAAGATGTGGAGAATATAGGTTATGTCATTCCGACGCCAGTTATCATGCATTTCATCCGTGATTATGAGAAGAATGGGAGTTATACTGGTTTCCCTATTCTTGGGGTTGAGTGGCAGAAAATGGAAAATCCTGATCTACGAAAGTCAATGGGCATGAGATCTGATCAGAAAGGTGTGCGTATTAGAAGAATTGATCCTACTGCTCCTGAATCTAAGGTTTTGAAACCATCAGATGTTATTCTTAGCTTTGATGGGGTTAATATTGCTAATGATGGAACAGTTCCCTTTCGTCATGGAGAGCGCATTGGTTTCAGTTATCTCATATCCCAGAAATATACTGGTGATAATGCAGTGATCAAAGTATTGCGGAATTCTGATGTTTTAACATTTGACGTTAAACTCAATAGCCATAGAAGGCTTATTCCAGCACACAGCAAGGGCAAGCCTCCCTCGTATTATATTATTGCAGGATTTGTTTTTTCAGCTGTTTCAGTTCCTTATCTTCGTTCGGAGTATGGAAAAGATTATGAGTTTGAAGCTCCAGTCAAGCTTTTGGATAAACTGCTGCATTCAATGCCACAATCACCAGATGAACAACTTGTTGTGATCTCTCAGGTGCTGGTGGCTGATATCAACATTGGATATGAAGATATTGTTAACACTCAGGTCCTCGCTTTCAATGGTAAACCTGTGAAAAATCTCAAAAGCTTGGCCGCTATGGTAGAGAGCTGTCGTGATGAATATCTAAAATTTAATCTAGAATATGATCAGATAGTGGTCCTTCGCACAAAGACTGCAAAAGCAGCTACTTTAGACATTCTTGCAACACACTGCATTCCATCCGCAATGTCTGATGATCTTAAGTCATGA 1746 0.4731 MGGGSNNKRKRGRKPKNPAPETLDIPATTTTAAANNNNSMDDVFSNGSVDLIDDTSSPHLRRRRGRPRKTPAIPDKPPGRRLPRHVDGSAVPAEVGVATIMEPDPVFEGVAARVLPAMDPVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFVIAGRRVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIALLTVDDDEFWQGMSPVEFGDLPTLQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNDKGNCVGIAFQSLKHEDVENIGYVIPTPVIMHFIRDYEKNGSYTGFPILGVEWQKMENPDLRKSMGMRSDQKGVRIRRIDPTAPESKVLKPSDVILSFDGVNIANDGTVPFRHGERIGFSYLISQKYTGDNAVIKVLRNSDVLTFDVKLNSHRRLIPAHSKGKPPSYYIIAGFVFSAVSVPYLRSEYGKDYEFEAPVKLLDKLLHSMPQSPDEQLVVISQVLVADINIGYEDIVNTQVLAFNGKPVKNLKSLAAMVESCRDEYLKFNLEYDQIVVLRTKTAKAATLDILATHCIPSAMSDDLKS* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2238 581 PANTHER - 6 580 - -
Lja4g2238 581 CDD PDZ_serine_protease 324 424 - -
Lja4g2238 581 MobiDBLite consensus disorder prediction 23 53 - -
Lja4g2238 581 Pfam PDZ domain 433 578 IPR041517 -
Lja4g2238 581 Pfam PDZ domain 326 426 IPR001478 GO:0005515
Lja4g2238 581 Gene3D - 323 431 IPR036034 GO:0005515
Lja4g2238 581 SUPERFAMILY Trypsin-like serine proteases 116 318 IPR009003 -
Lja4g2238 581 MobiDBLite consensus disorder prediction 1 88 - -
Lja4g2238 581 Gene3D - 205 316 IPR043504 -
Lja4g2238 581 Gene3D - 96 204 IPR043504 -
Lja4g2238 581 Pfam Trypsin-like peptidase domain 148 285 - -
Lja4g2238 581 Gene3D - 432 581 IPR046449 -
Lja4g2238 581 SUPERFAMILY PDZ domain-like 349 431 IPR036034 GO:0005515
Lja4g2238 581 PRINTS HtrA/DegQ protease family signature 219 243 IPR001940 GO:0004252|GO:0006508
Lja4g2238 581 PRINTS HtrA/DegQ protease family signature 256 273 IPR001940 GO:0004252|GO:0006508
Lja4g2238 581 PRINTS HtrA/DegQ protease family signature 177 197 IPR001940 GO:0004252|GO:0006508
Lja4g2238 581 PRINTS HtrA/DegQ protease family signature 365 377 IPR001940 GO:0004252|GO:0006508
Lja4g2238 581 PRINTS HtrA/DegQ protease family signature 149 161 IPR001940 GO:0004252|GO:0006508
Lja4g2238 581 PANTHER PROTEASE DO-LIKE 9 6 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2238 Lja-Chr4 24606307 24612204 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2238 K25897 - gmx:100791040 961.059
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2238 4 24606307 24612204 Lja4g2238 4 24606307 24612204 ECH