Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2230 ATGTTTCCTCCTCGCAACTACTCAGCATCATGCTTCCTTCTTTCTCTCCTTCTACTTTCCACCTTCACCTTGTCCCTCTCTCAATCCCATTCCGCCGCCAAGAAAAAGCGCATGAGAGAAAAAGTTCGCCAAATGTTTTACCATGCTTATGACAACTACATGACTCACGCATTTCCGCATGATGAGCTGAAACCTCTCACTAAATCTTTCACTGATTCCCTAAGCGAGCTGGGAAATTTGAAGCTTGAACACTTGCCTCGAGACTACAGCGGCTCCGCCCTTACGCTTATTGAATCGCTGTCTAGCCTTGTTATTATGGGCAACAATACTGAATTCGAGAGGGCGGTGCTCTGGCTTTCGGAGAATCTGACATTTGATGTCGATGCGCGTATAAATCTTTTTGAGTGCAACATAAGAGTTCTTGGAGGACTCGTGTCTGCTCATTTACTTGCATCCGATCCTTCAAAGAAGTTGTTTCAAGGAGCTTACAATAATCAGCTGCTAGTTCTGGCTGAGGATTTAGGGAAACGCTTTCTACCGGCATTCAATACGCCCACTGGATTGCCATATGCATGGATTAACTTAAAGTATGGAGTAATGGAGAATGAGACTACAGAAACAAGCACTTCAGGGTGTGGTTCTCTGATTCTTGAAATGGGAGCTTTATCAAAACTGACTGGTGACCCCAGATATGAATCAGCAGCTTTACGAGCTCTTCGTAAGCTATGGAGTATGCAGAGCTCATTAAAATTATTTGGAACCACGCTGGATGTGGCAACCGGGCAATGGATTGAATATTCTTCAGGAATTGGAGCTGGGGTTGATTCCTTCTATGAGTATCTACTTAAAGCCCATATTCTTTTTGGAAAGGAAGACTTTTGGAGAATGTTTCATTCTTCTTATATTGCTGTTCAGAAATATTTCAGACATGGTCCTTGGTACCATGAAGCAGATATGAGGACAGGAAGAGCAACATATTGGCAGCTCACAAGTCTTCAAGCATTTTGGCCCGGCCTACAGGTTCTTATGGGGGATATATTTGCTGCTAATTCATCTCACCGTGAGTTCTTCCATGTGTGGAAGAGATTCGGAGTGCTACCAGAGAGGTATTTGCTGGACCATCAGATGCTACATCCTACTGAAAAATATTATCCATTACGCCCTGAATTGGCCGAGTCAACATTCTACTTATATCAAGCTACTAAAGATCCATGGTATATTGAAGTCGGGGAATCAATAGTCAATTCTCTTAATTTATACACCAAAGTAGAAGGTGGGTTTGCAAGCGTCAAGGATGTGACAACTATGCAGTTGGAAGATCATCAACATAGCTTTTTTCTTGCTGAAACGTGCAAATATTTATATCTTCTATTTGATGATTCATTTATGCTTGGGAGTAATTATATATTTACGACCGAAGGTCATCCCCTTCCAGTACTAAACACTTGGCATGAAGAGCTTCCAGAAGCTTACATTCCTACTAATTGGACTATCATGAAGAGACAAGCAGCAGCAAATAGAGTCAGTGCAATGTCTTTGCAAGAATGTCCTGCTATGACCTTAAATTCAGGTCAACATATAGAGAGTTGTTGCCACATCTCGGATGCTCGTAGTGATCACAGGTGTTTGACTGATGAAGATTGTGGAGTTGATGCCACTACCTGCAGAAGAAGATCATGTAGCATGGCTGGTTATTGTGGGCTATGGATCTTCATATGA 1719 0.4229 MFPPRNYSASCFLLSLLLLSTFTLSLSQSHSAAKKKRMREKVRQMFYHAYDNYMTHAFPHDELKPLTKSFTDSLSELGNLKLEHLPRDYSGSALTLIESLSSLVIMGNNTEFERAVLWLSENLTFDVDARINLFECNIRVLGGLVSAHLLASDPSKKLFQGAYNNQLLVLAEDLGKRFLPAFNTPTGLPYAWINLKYGVMENETTETSTSGCGSLILEMGALSKLTGDPRYESAALRALRKLWSMQSSLKLFGTTLDVATGQWIEYSSGIGAGVDSFYEYLLKAHILFGKEDFWRMFHSSYIAVQKYFRHGPWYHEADMRTGRATYWQLTSLQAFWPGLQVLMGDIFAANSSHREFFHVWKRFGVLPERYLLDHQMLHPTEKYYPLRPELAESTFYLYQATKDPWYIEVGESIVNSLNLYTKVEGGFASVKDVTTMQLEDHQHSFFLAETCKYLYLLFDDSFMLGSNYIFTTEGHPLPVLNTWHEELPEAYIPTNWTIMKRQAAANRVSAMSLQECPAMTLNSGQHIESCCHISDARSDHRCLTDEDCGVDATTCRRRSCSMAGYCGLWIFI* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2230 572 Gene3D - 27 489 IPR012341 GO:0005975
Lja4g2230 572 PRINTS Glycosyl hydrolase family 47 signature 45 65 IPR001382 GO:0004571|GO:0005509|GO:0016020
Lja4g2230 572 PRINTS Glycosyl hydrolase family 47 signature 271 288 IPR001382 GO:0004571|GO:0005509|GO:0016020
Lja4g2230 572 PRINTS Glycosyl hydrolase family 47 signature 180 199 IPR001382 GO:0004571|GO:0005509|GO:0016020
Lja4g2230 572 PRINTS Glycosyl hydrolase family 47 signature 328 344 IPR001382 GO:0004571|GO:0005509|GO:0016020
Lja4g2230 572 PRINTS Glycosyl hydrolase family 47 signature 385 409 IPR001382 GO:0004571|GO:0005509|GO:0016020
Lja4g2230 572 PRINTS Glycosyl hydrolase family 47 signature 444 464 IPR001382 GO:0004571|GO:0005509|GO:0016020
Lja4g2230 572 PRINTS Glycosyl hydrolase family 47 signature 130 148 IPR001382 GO:0004571|GO:0005509|GO:0016020
Lja4g2230 572 Pfam Glycosyl hydrolase family 47 45 478 IPR001382 GO:0004571|GO:0005509|GO:0016020
Lja4g2230 572 SUPERFAMILY Seven-hairpin glycosidases 36 492 IPR036026 GO:0004571|GO:0005509|GO:0016020
Lja4g2230 572 PANTHER ER DEGRADATION-ENHANCING ALPHA-MANNOSIDASE-LIKE PROTEIN 2 20 571 IPR044674 GO:0004571|GO:1904380|GO:1904382
Lja4g2230 572 PANTHER ALPHA-MANNOSIDASE I MNS5 20 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2230 Lja-Chr4 24506081 24512068 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2230 12 569 Glycoside Hydrolase AT1G27520 78.075 0.0 934
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2230 K10084 - gmx:100793674 1055.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2230 4 24506081 24512068 Lja4g2230 4 24506081 24512068 ECH