Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2217 ATGGTTTCCGATTCAATCGCCGCCGCTCCGATTCCCTCCGCCGCCAACACCAAGAACCCTGGCAAGAAGAAGAGGACCAATAGGTCTGCGAAATTGAAGCAGTATAAGATTGATGCGCGTCGCGAGCAATGGCTTAATCAAGGTGCGGTTAAGAGCAAGGGGTGCAAGGATGGGGTGGATGATGATGGCCATGCGCTGCCATCGCCGGCTGCGGGGAAGCAGGGTAAGGGCTCGTTGCAGCAGCTTGAGATGAGGCGAGAAGGTGATGAGGATGATGGGTTGATTCATCAAGATAGTGATTCGGAGTCGCCGTCTAACAGTCCCACTAGTCCTGACTTGTGTGGTAATGATTCTGGGACGAGCTTCACTGGGGGTAGCAGTGGGGGAGGTAGCAGCAGCAGCAGTATCAGTTCCAGCAGTGCCGGGTGCTTCTCTGGGTATATCACTGAAGTGGACGAAGAAGTAGAGGAGGAGGAGGAGGAGGGCGATGATGAAGGCTTGGATGATTGGGAGGCTGTTGCAGATGCTTTGGCCGCCGATGACAAGAATCAATGCCCTTGTTCTGATTTGCCCCCTTCCCATGATGAGCATGTTGGGCAAACTGTTCCGCCTCGTGCAGCGGCTAATGGGTCGGATTCCAATTCTAAACCTGCGAGTGGTAGATTGGTTCCTTGGGGCTCTGGAAATGTCCGAGCTTGGAGGGCTGATGATGCTTTTCGCCCTCAGAGTTTGCCCAATCTTTCTAAGCAGCACAGTATGCCGAACCCTGATCGGTACTGTGGAGGGGTTCCCTGGTCTCCCAATTCTGCACCATCCTCTTGTCCCATATGCTTTGAGGATCTTGATTTAACTGACACGAGTTTTTTGCCATGCCTGTGTGGGTTTCGGCTTTGCCTCTTCTGCCACAAGAGGATTCTCGAGGATGATGGTCGGTGTCCTGGGTGCAGGAAGCCGTATGAGCGTGAACCTGTTGAGACAGAGGCAAGTGTGGTTGGTGGTAGCTTGACTCTTCGGTTGGCTCGCTCATGTAGCATGATTGAAAGGGCTTGA 1050 0.5343 MVSDSIAAAPIPSAANTKNPGKKKRTNRSAKLKQYKIDARREQWLNQGAVKSKGCKDGVDDDGHALPSPAAGKQGKGSLQQLEMRREGDEDDGLIHQDSDSESPSNSPTSPDLCGNDSGTSFTGGSSGGGSSSSSISSSSAGCFSGYITEVDEEVEEEEEEGDDEGLDDWEAVADALAADDKNQCPCSDLPPSHDEHVGQTVPPRAAANGSDSNSKPASGRLVPWGSGNVRAWRADDAFRPQSLPNLSKQHSMPNPDRYCGGVPWSPNSAPSSCPICFEDLDLTDTSFLPCLCGFRLCLFCHKRILEDDGRCPGCRKPYEREPVETEASVVGGSLTLRLARSCSMIERA* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2217 349 CDD mRING-HC-C4C4_CNOT4 274 317 IPR039515 -
Lja4g2217 349 MobiDBLite consensus disorder prediction 99 145 - -
Lja4g2217 349 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 11 347 IPR039780 GO:0004842|GO:0030014
Lja4g2217 349 MobiDBLite consensus disorder prediction 1 222 - -
Lja4g2217 349 ProSiteProfiles Zinc finger RING-type profile. 274 316 IPR001841 -
Lja4g2217 349 MobiDBLite consensus disorder prediction 150 171 - -
Lja4g2217 349 MobiDBLite consensus disorder prediction 206 220 - -
Lja4g2217 349 SUPERFAMILY RING/U-box 270 325 - -
Lja4g2217 349 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 11 347 - -
Lja4g2217 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 266 331 IPR013083 -
Lja4g2217 349 Pfam RING/Ubox like zinc-binding domain 274 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2217 Lja-Chr4 24266063 24268452 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2217 - - lja:Lj4g3v0190050.1 487.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2217 4 24266063 24268452 Lja4g2217 4 24266063 24268452 ECH