Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2196 ATGATGCCCATGAAGATGACAGAGATGTGGACAACAATGGGCTCAACCTTAGCCAGCTTCATGTTCCTCTTCGCCGTCATCCGCCAGTACTGTCCCTACGAGGTTCGCCGCTTCTTCGAGAAGCACACTCACACTCTCACCACCTACTTCTACCCTTACATCCGCATCTCTTTCCATGAATTCTCCGGCGACCGCCTCAAGCGCAGCGACGCCTACGCCGCCGTAGAAGCCTACCTCAGCGCCAACACTTCAAAGAGCGCAAAGAGGCTCAAAGCAGAGATGGGAAAAGACGCCTGCAAAGTCACTGATGAGTTCAAAGGTGTGAAAGTTTGGTGGGTTTGTAGCAAAATCATGTCCCCATCAAGGTCCATGACGATTTACCAAGAACAAGAGAAGAGGTTCTACAAGTTAACTTTCCACAAGAAATATAGAGACACTGTTACTGGTTCTTATTTGGAGCATGTGATGAGGGAAGGGAAGGAGATTCGTTTGAGGAACAGGCAGAGGAAGTTGTATACAAATAGCCCTGGTTACAAATGGCCGAGTTACAAGCAAACAATGTGGAGTCACATTGTTTTTGAGCACCCTGCAACTTTTGAAACAATGGCTATGGAGCCAGAGAAGAAGAAGGAGATCATTGAGGATTTGGTCACATTTAGTAAGAGTAAGGATTTTTATGCTAGGATTGGGAAGGCATGGAAAAGGGGTTATTTGCTTTTTGGTCCTCCTGGTACTGGGAAATCTACAATGATTGCTGCCATGGCTAACTTGTTGGGGTATGATGTGTATGACTTGGAGCTCACTGCAGTGAAGGACAACACAGAGCTGAGGAAGCTTTTGATTGAGACAACTTGTAAGTCTATAATTGTTATTGAGGACATTGATTGCTCTCTTGATCTCACAGGGCAGAGGAAGAAGAATGGGGAGAAATTTACAGAGGATGTTGAGAGTGATAAACTGAACCATGATGTTGTTGTGAGGAAAGAGGCTAATAAAGAAGAAGGAAGCTGTGGTAGCAAGGTCACACTTTCTGGGCTGTTGAATTTCATAGATGGGATTTGGTCTGCTTGTGGAGGAGAGAGGTTGATTGTGTTCACAACAAACTATGTGGAGAAGCTTGATCCTGCACTCATCAGAAGGGGGAGAATGGATAAGCATATTGAGCTTTCTTACTGCACTTTTGAAGGGTTTAAAGTTCTTGCCAATAATTACTTGAAGCTTGAGAATCATGCATTGTTTGACACAATCAAGAGGCTAATTGGGGAGATTGAGATCACACCAGCTGATGTTGCTGAGAATCTCATGCCAAAGTCTGCACTGGATGATGCTGATAAGTGTCTTTCAAACCTGATTGAAGCACTTGAGGAAGCAAAAGCTAATGCAAAAGCAGAGGAGGTGCTAAGACAGAGTAGTTCTATTAAAGAAGAAGGTGAGGAATTGGGACACTTTGGTCACATTAAGGAAAATGGCAACATTGGAGATGACAAAGAAATTGATCAAGCAAAGGACAAGAGCATGAGGTGGAACATTTGTGCTAATACGATAAAATTACTTTTTTTTTTTCCGATGGATGACAATAAAATTACATTACCATATGAAGTTTTTTAA 1608 0.431 MMPMKMTEMWTTMGSTLASFMFLFAVIRQYCPYEVRRFFEKHTHTLTTYFYPYIRISFHEFSGDRLKRSDAYAAVEAYLSANTSKSAKRLKAEMGKDACKVTDEFKGVKVWWVCSKIMSPSRSMTIYQEQEKRFYKLTFHKKYRDTVTGSYLEHVMREGKEIRLRNRQRKLYTNSPGYKWPSYKQTMWSHIVFEHPATFETMAMEPEKKKEIIEDLVTFSKSKDFYARIGKAWKRGYLLFGPPGTGKSTMIAAMANLLGYDVYDLELTAVKDNTELRKLLIETTCKSIIVIEDIDCSLDLTGQRKKNGEKFTEDVESDKLNHDVVVRKEANKEEGSCGSKVTLSGLLNFIDGIWSACGGERLIVFTTNYVEKLDPALIRRGRMDKHIELSYCTFEGFKVLANNYLKLENHALFDTIKRLIGEIEITPADVAENLMPKSALDDADKCLSNLIEALEEAKANAKAEEVLRQSSSIKEEGEELGHFGHIKENGNIGDDKEIDQAKDKSMRWNICANTIKLLFFFPMDDNKITLPYEVF* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2196 535 PANTHER BCS1 AAA-TYPE ATPASE 7 477 - -
Lja4g2196 535 CDD AAA 234 391 - -
Lja4g2196 535 Pfam Domain associated at C-terminal with AAA 32 114 IPR025753 -
Lja4g2196 535 Pfam ATPase family associated with various cellular activities (AAA) 238 390 IPR003959 GO:0005524|GO:0016887
Lja4g2196 535 Gene3D - 387 449 - -
Lja4g2196 535 SMART AAA_5 233 393 IPR003593 -
Lja4g2196 535 Coils Coil 440 467 - -
Lja4g2196 535 Gene3D - 193 386 IPR027417 -
Lja4g2196 535 ProSitePatterns AAA-protein family signature. 361 380 IPR003960 GO:0005524|GO:0016887
Lja4g2196 535 PANTHER ATP BINDING PROTEIN 7 477 - -
Lja4g2196 535 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 93 454 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2196 Lja-Chr4 23669928 23672606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2196 198 387 Miscellaneous Gene Families AT5G58870 30.208 3.57e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2196 - - gmx:100798176 793.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2196 4 23669928 23672606 Lja4g2196 4 23669928 23672606 ECH