Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2145 ATGGCAGCAACATCAGCAGCTACTTTCACAATTGGAGCACCCACTTCCCTTTACCAAAGGGGAAGCTCCCTTCCTCAATCAAAGTCCTTTGGATTGAGGTTCACCTCCCAGAATCATTTGAATGGCTTTTGTGGCCTCAGGGCTGTGTCATCTGTGAGGTGTGAGGTGGAATCGTCCTTCTCCGGCAAGGAAACTGGTTCTGCTTTGCGGGCATCTTTTGCGACCAAAGCTCAAAAGGAAAGCCGGAATCAGCACCAATTGCAGCCTCAGGCGTCGTACAAAGTGGCGGTTCTTGGTGCTGCTGGAGGGATTGGTCAGCCTCTTGCACTTCTCATCAAGATGTCACCGTTGGTTTCTGACCTGCATTTATATGATATTGCAAATGTTAAGGGAGTTGCTGCTGATATCAGTCATTGCAACACTCCCTCACAGGTCAGGGATTTCACTGGGGCTTCTGAGTTAGGGGATTGTTTGAAAGGGGTTAATGTGGTTGTTATCCCTGCTGGAGTTCCAAGGAAGCCAGGCATGACCCGTGATGACCTTTTCAACATTAATGCTGGCATAGTTAGAGACTTGGTTTCAGCTGTTGCGGATAATTGCCCTGGTGCTTTTATTCACATTATCAGCAACCCAGTGAACTCTACCGTGCCAATTGCTGCGGAAATTTTGAAACAGAAGGGTGTCTATGATCCTAAGAAGCTCTTTGGTGTTACCACACTCGATGTTGTGAGGGCTAACACATTTGTTGCTCAAAGGAAGAACCTGAAGCTGATTGATGTCGATGTTCCGGTTGTTGGTGGCCATGCTGGGATCACCATTCTTCCTCTGCTATCAAAGACAAGACCCTCAGCGAGTTTCACTGATGAAGAAATTGAGGAGTTAACTGTCAGGATTCAGAATGCTGGAACTGAAGTTGTCGAAGCAAAGGCCGGCGCAGGGTCTGCTACTTTGTCCATGGCGTATGCAGCTGCTCGATTTGTCGAATCATCACTTCGGGCACTTGATGGGGATGGAGATGTGTATGAGTGCGCATATGTGCAATCAGATCTGACTGAACTCCCATTTTTCGCTTCAAGGGTGAAGCTTGGCAAGAAAGGAGTTGAGGCTTTGATTCCATCTGACCTCCAAGGGTTGACTGAGTATGAGCAGAAGGCTCTGGAAGCACTTAAGCCTGAACTCAAGTCCAGCATAGAGAAGGGGGTTGCTTTTGCTCAGAAACAAACAGTTGCTGCTTAA 1236 0.4782 MAATSAATFTIGAPTSLYQRGSSLPQSKSFGLRFTSQNHLNGFCGLRAVSSVRCEVESSFSGKETGSALRASFATKAQKESRNQHQLQPQASYKVAVLGAAGGIGQPLALLIKMSPLVSDLHLYDIANVKGVAADISHCNTPSQVRDFTGASELGDCLKGVNVVVIPAGVPRKPGMTRDDLFNINAGIVRDLVSAVADNCPGAFIHIISNPVNSTVPIAAEILKQKGVYDPKKLFGVTTLDVVRANTFVAQRKNLKLIDVDVPVVGGHAGITILPLLSKTRPSASFTDEEIEELTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECAYVQSDLTELPFFASRVKLGKKGVEALIPSDLQGLTEYEQKALEALKPELKSSIEKGVAFAQKQTVAA* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2145 411 PANTHER MALATE AND LACTATE DEHYDROGENASE 28 411 - -
Lja4g2145 411 CDD MDH_glyoxysomal_mitochondrial 93 404 IPR010097 GO:0006099|GO:0030060
Lja4g2145 411 ProSitePatterns Malate dehydrogenase active site signature. 237 249 IPR001252 GO:0006108|GO:0016615
Lja4g2145 411 Gene3D - 238 409 IPR015955 GO:0003824|GO:0016616
Lja4g2145 411 Gene3D - 91 237 - -
Lja4g2145 411 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 88 237 IPR036291 -
Lja4g2145 411 PANTHER MALATE DEHYDROGENASE, GLYOXYSOMAL 28 411 - -
Lja4g2145 411 TIGRFAM MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 94 405 IPR010097 GO:0006099|GO:0030060
Lja4g2145 411 Pfam lactate/malate dehydrogenase, NAD binding domain 94 236 IPR001236 GO:0016491
Lja4g2145 411 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 238 403 IPR022383 GO:0016616
Lja4g2145 411 SUPERFAMILY LDH C-terminal domain-like 237 404 IPR015955 GO:0003824|GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2145 Lja-Chr4 22997463 22999808 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2145 K00026 - gmx:100814078 703.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2145 4 22997463 22999808 Lja4g2145 4 22997463 22999808 ECH