Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2144 ATGAACTCCATCGCCCTCAAATCCTTCGTCGGACTCCGCCAATCCTCGCCGGAAGCCCCCCATTTCTCCGTCCAGCTTAAGCCCAATGCCCCCCGCCGCAACTTCAAAGTCCTCGCCGGAAAATTCAGCCCCAAGCTCCAGGGCCGGAACCTCCGCGTGGCGGTTGTCGGAGGCGGCCCAGCTGGTGGAGCTGCGGCGGAGACTCTCTCCAAGGCCGGAATAGAAACGTTCCTCATCGAGCGTAAGATGGATAACTGCAAACCCTGCGGCGGAGCTATTCCGCTGTGCATGGTGGGTGAGTTCGACCTCCCGCTTGACATCATCGACCGCAGGGTAACCAAGATGAAGATGATTTCGCCGTCGAATGTGGCTGTTGACATTGGCCGGACGCTGAAGCCGCATGAGTATATTGGTATGGTTAGGCGTGAGGTGCTGGATGCTTACCTGAGGGACCGGGCGAAGCAGAATGGGGCGGAGATTATCAATGGGTTGTTCTTGAAAATGGATGTTCCGGTGGATAAGGTGACGCCGTATGTGCTTCATTACACCGCATATGACGGCAAAACTGGTGGGCTTGGTGAGAAACGGACCTTGGAGGTTGATGCTGTCATTGGAGCTGATGGGGCGAACTCAAGGGTTGCTAAGTCCATTGATGCTGGTGATTATGAATATGCCATTGCATTTCAGGAGAGGATAAAAATTCCGGATGATAAAATGGCTTACTATGAGGACCTTGCGGAGATGTATGTGGGTGATGATGTTTCTCCTGATTTTTACGGGTGGGTGTTTCCTAAATGTGATCATGTGGCTGTTGGCACTGGCACTGTGACACACAAGGGAGACATCAAGAAGTTCCAACTAGCAACCAGGAAAAGAGCTGAGGACAAGATTTTGGGGGGCAAGATCATCCGAGTGGAGGCACACCCCATCCCTGAACATCCAAGGCCGCGAAGATTGAAGGGAAGAGTAGCCCTGGTGGGCGATGCTGCTGGCTATGTGACCAAATGCTCTGGGGAAGGAATCTATTTCGCAGCCAAGAGCGGGAGGATGTGTGCAGAGGCGATCGTTGAAGGTTCAGAGAATGGGAAGAGGTTGGTGGAAGAAGGGGACTTGAGAAAGTACTTGGAGAAGTGGGATAAGACTTATTGGCCAACTTACAAGGTCTTGGATGTGCTTCAGAAGGTGTTTTACAGGTCTGACCCTGCGAGGGAAGCGTTTGTGGAGATGTGTGCTGATGAGTATGTGCAGAAGATGACCTTTGATAGCTATTTGTACAAGACAGTGGCACCTGGAAATCCATTGCAGGATATCAAGTTGGCTATTAACACCATTGGGAGCTTGGTGAGGGCCAATGCTCTGAAGAGGGAGATGGAAAAACTTAATGTATGA 1389 0.5176 MNSIALKSFVGLRQSSPEAPHFSVQLKPNAPRRNFKVLAGKFSPKLQGRNLRVAVVGGGPAGGAAAETLSKAGIETFLIERKMDNCKPCGGAIPLCMVGEFDLPLDIIDRRVTKMKMISPSNVAVDIGRTLKPHEYIGMVRREVLDAYLRDRAKQNGAEIINGLFLKMDVPVDKVTPYVLHYTAYDGKTGGLGEKRTLEVDAVIGADGANSRVAKSIDAGDYEYAIAFQERIKIPDDKMAYYEDLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKGDIKKFQLATRKRAEDKILGGKIIRVEAHPIPEHPRPRRLKGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGKRLVEEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSDPAREAFVEMCADEYVQKMTFDSYLYKTVAPGNPLQDIKLAINTIGSLVRANALKREMEKLNV* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2144 462 TIGRFAM GG-red-SF: geranylgeranyl reductase family 53 355 IPR011777 GO:0016628
Lja4g2144 462 PANTHER OS01G0265000 PROTEIN 38 461 - -
Lja4g2144 462 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 52 74 - -
Lja4g2144 462 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 199 214 - -
Lja4g2144 462 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 320 335 - -
Lja4g2144 462 TIGRFAM ChlP: geranylgeranyl reductase 51 449 IPR011774 GO:0045550
Lja4g2144 462 PANTHER GERANYLGERANYL DIPHOSPHATE REDUCTASE 38 461 - -
Lja4g2144 462 TIGRFAM BchP-ChlP: geranylgeranyl reductase 52 449 IPR010253 GO:0015979|GO:0015995|GO:0045550
Lja4g2144 462 Gene3D - 50 461 IPR036188 -
Lja4g2144 462 Pfam Pyridine nucleotide-disulphide oxidoreductase 52 224 IPR023753 GO:0016491
Lja4g2144 462 SUPERFAMILY FAD/NAD(P)-binding domain 51 433 IPR036188 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2144 K10960 - gmx:100779933 857.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2144 4 22991801 22994546 Lja4g2144 4 22991801 22994546 ECH