Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2143 ATGAAGTTCAATCTGGTGTTAGTTGCTATAGTAGCCACCATTTTGGGAATTGGGCTTGAAGGATGCCATTGCAAGATGGTGCAGTTCATATTTGGAGACTCTCTCTCAGATGTTGGAAATAACATGCATCTGTCTAAAAGTCTTGCTCAGGCAAGCCTTCCTTGGTATGGTATAGACTTGGGTAATGGGTTACCTAATGGAAGGTTCTCCAATGGTCGCACAGTTTCTGATATAATAGGTGACAAATTGGGCCTACCTAGACCTCCTGCAGTCCTGGACCCATCCTTAACTGAAGAAGTTATACTAGAAAATGGTGTGAACTATGCTTCTGGTGGTGGCGGCATCTTGAATGAAACCGGCTCATACTTTATAGAAAAGTTATCTCTGGACAAACAAATTGAGTTGTTTCAGGGGACACAAAAACTGGTTCAAGGCAAAATTGGAAAAAAGGCGGCAGACAAGTTTTTCAAGGAAGCTAGTTATGTGGTTGCTCTAGGAAGCAATGATTTCATCAACAACTACTTGATGCCTGTTTATCCTGATTCATGGACATACAATGATGAAACCTTCATGGACTACTTGATTGGAACACTAGAAAGACAACTCATGCTTCTTCATAGCTTAGGAGCAAGGAAACTCATGGTTTTCGGGCTGGCTCCAATGGGCTGCATTCCCCTTCAGAGGGTGCTTAGTACAACTGGGAATTGTCGCGAAAAAACAAACAAGCTGGCTCTAAACTTTAACAAAGCTGGAAGCAAGTTAGTAAATGACTTGGTGGAGCAGCTTCCTAATGCAAAATATAGATTTGGAGATACATATGATTTTGTTTATGATCTGATTAGCAATCCAATTAAGTATGGATTTGAAAACTCAGACACTCCTTGTTGTTCCTTTGGGAGAATTAGACCTTCGCTTACATGTGTGCCGGCATCAACACTGTGCAAAGATAGAAGCAAATATGTGTTTTGGGATGAGTACCACCCCTCAGATAGTGCTAATGAACTGATTGCAAATGAGCTCATCAAGAAATTTGGATTCTCACATGATGATCAAAGTGGTGCTCCTTCACCAGCACCTGCTGTTGCTCCAGCTCCGGAAGATTAA 1104 0.4167 MKFNLVLVAIVATILGIGLEGCHCKMVQFIFGDSLSDVGNNMHLSKSLAQASLPWYGIDLGNGLPNGRFSNGRTVSDIIGDKLGLPRPPAVLDPSLTEEVILENGVNYASGGGGILNETGSYFIEKLSLDKQIELFQGTQKLVQGKIGKKAADKFFKEASYVVALGSNDFINNYLMPVYPDSWTYNDETFMDYLIGTLERQLMLLHSLGARKLMVFGLAPMGCIPLQRVLSTTGNCREKTNKLALNFNKAGSKLVNDLVEQLPNAKYRFGDTYDFVYDLISNPIKYGFENSDTPCCSFGRIRPSLTCVPASTLCKDRSKYVFWDEYHPSDSANELIANELIKKFGFSHDDQSGAPSPAPAVAPAPED* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2143 367 MobiDBLite consensus disorder prediction 348 367 - -
Lja4g2143 367 CDD SGNH_plant_lipase_like 29 343 IPR035669 -
Lja4g2143 367 Pfam GDSL-like Lipase/Acylhydrolase 29 339 IPR001087 GO:0016788
Lja4g2143 367 SUPERFAMILY SGNH hydrolase 29 344 - -
Lja4g2143 367 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 1 357 - -
Lja4g2143 367 PANTHER GDSL LIPASE/ACYLHYDROLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G14700) 1 357 - -
Lja4g2143 367 Gene3D SGNH hydrolase 27 344 IPR036514 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2143 Lja-Chr4 22980542 22982819 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2143 29 340 Acyl Lipid Metabolism Gene Families AT4G10950 32.803 8.39e-59 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2143 - - gmx:100815129 613.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2143 4 22980542 22982819 Lja4g2143 4 22980542 22982819 ECH