Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2133 ATGGCTGCAACTTCCTTGTGTTCCTCGACTCTCCAATCCCAGATCAATGGACCTTCCTCCCTCCACAGCAAAACCGCTATTTTCAACAATCATCCCCGTTCCCTCACTTTCTCCAGGAGGAAAATTTCAACCATCGTGAAGGCATCATCTCGCGTTGACAAGTTTTCGAAGAGCGATATCATTGTTTCTCCATCTATTCTTTCTGCTAACTTTGCAAAATTAGGAGAACAGGTTAAAGCAGTGGAGTTGGCAGGTTGTGATTGGATTCATGTTGATGTCATGGATGGCCGCTTTGTTCCAAATATTACAATTGGACCTCTTATAGTTGATGCATTGCGCCCTGTGACAGATCTTCCCTTGGATGTACACCTGATGATTGTAGAACCTGAACAGCGGGTGCCGGATTTTATCAAGGCAGGGGCTGACATAGTCAGTATTCATTGTGAACAATCTTCCACCATCCATTTGCACCGTACAGTCAATCAAGTGAAAAGTCTGGGAGCTAAAGCTGGAGTTGTCCTAAACCCTGGTACCCCACTGAGTGCAATAGAATATGTTCTTGATGTGGTTGATTTGGTCTTAATTATGTCTGTAAACCCTGGCTTTGGTGGCCAGAGTTTTATTGAAAGTCAAGTAAAGAAAATTTCTGACTTGAGAAGATTATGCGCAGAGAAGGGTGTGAATCCATGGATTGAAGTGGATGGTGGAGTTACTCCAGCAAATGCTTATAAGGTGATTGAGGCTGGAGCTAACGCACTGGTTGCTGGTTCCGCTGTCTTTGGAGCTAAAGATTATGCTGAAGCTATAAAAGGAATCAAAACTAGCAAAAGACCTGAACCAGTTGCTGTGTAA 852 0.4366 MAATSLCSSTLQSQINGPSSLHSKTAIFNNHPRSLTFSRRKISTIVKASSRVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLIVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSIHCEQSSTIHLHRTVNQVKSLGAKAGVVLNPGTPLSAIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEKGVNPWIEVDGGVTPANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPEPVAV* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2133 283 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 1. 89 103 IPR000056 GO:0005975|GO:0016857
Lja4g2133 283 Gene3D Aldolase class I 50 279 IPR013785 -
Lja4g2133 283 CDD RPE 61 273 IPR000056 GO:0005975|GO:0016857
Lja4g2133 283 PANTHER RIBULOSE-5-PHOSPHATE-3-EPIMERASE 23 273 IPR000056 GO:0005975|GO:0016857
Lja4g2133 283 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 2. 193 215 IPR000056 GO:0005975|GO:0016857
Lja4g2133 283 Hamap Ribulose-phosphate 3-epimerase [rpe]. 59 275 IPR026019 GO:0004750|GO:0006098
Lja4g2133 283 PANTHER - 23 273 - -
Lja4g2133 283 TIGRFAM rpe: ribulose-phosphate 3-epimerase 62 273 IPR026019 GO:0004750|GO:0006098
Lja4g2133 283 SUPERFAMILY Ribulose-phoshate binding barrel 54 276 IPR011060 -
Lja4g2133 283 Pfam Ribulose-phosphate 3 epimerase family 62 260 IPR000056 GO:0005975|GO:0016857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2133 Lja-Chr4 22866777 22872139 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2133 K01783 - gmx:100786514 501.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2133 4 22866777 22872139 Lja4g2133 4 22866777 22872139 ECH