Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2130 ATGGGTTCTCTCGCCGCTGAAGATCGATCGGAGATTGCGTTCTTCGACTTGGAAACCACCGTCCCAACCCGACCCGGTCAGGGTTTTGCGATTCTCGAATTCGGAGCCATTCTCGTTTGCCCCAGGAAGCTCACCGAGCTCCGAAACTACTCCACTCTGGTTCGACCCGCCGATCTCTCTCTCATCTCACCATTGTCGGAGCGCTGCAACGGCATCACCCCTGACGCCGTCTCCTCCGCCCCCACCTTCGCCGACATCGCCGACACCGTCTATGACCTTCTTCATGGGAGGATTTGGGCTGGTCACAATATCATAAGGTTTGACTGTGTTAGGCTTAGAGATGCTTTTGCTGCGATTAATCAGCCACCACCTGAACCTAAGGGTACTATTGACTCTTTGGTTTTGTTGACTCAAAAGTTTGGAAGAAGAGCTGGTAACATGAAGATGGCTACTCTTGCAACCTATTTTGGGCTTGGACAGCAGACACATAGGAGCTTGGATGATGTTCGCATGAATCTTGAAGTTCTCAAATACTGTGCGACTGTTCTATTCTTGGAGTCAAGTCTCCCAGATATATTCACCGAGAATAGTTGGGTTTCACCAAATGCTACTACGAGAAGTCGTAGTAATGGGAAATCTCCATCAGAAGGGGGCTTATTAAATATAAATAAGGATACTGTTTTTAACATGCTTGAACTCAAGGACCGACTAAACGGAGAATCCATTCAAACAGATGTCGCAATGGATGAAAAACTCTTGCAAGATTTACCTGATACGTCTTCCGCATCTTCCGTGAATCAGGCTAGCAGCAGCTCTACTGCTGTTTTAGAACTTGACGAAATAAGTATCCCTGCTATTGATGCATCTCTGGTTCCATCTTTTCTTGGCAGTCAGAGGATAGAGTTACATCACAATGGCTTCTCATTTCAGCTTCACTGTACTGGTTTGAAAGTGCGGTTTGGAATAAGCACAAAGTTTGTTGATAGTGCTGGTCGGCCGCGGTTGAATTTTGTAGTTGATGCATCACCAAGTTTATGCGATGTTCTTGATGCCTGTGACCGTGTTGCACAGAAATTATCCTCGGATTCTGGCAGCAGCTCTGATTGGAGGCCAGTTGTTATTAGAAAAGAAGGCTTCTTCAACTATCCTACTATCAGATTGCATATTCCTACAGCAGTATTCGAAAACGTTGCCCTTTATGCCACAGAAATATATCAAAGAGAAACTTCTGGCACTGTGCAAAGACTTCTCTTCAGTAAATTTGATGCTGCTGAACTTGGCTCTATGTTCATGCCTGGGACATTTGTTGATGCATTCTTCTCCTTAGATCTGTATGACTATCAGCAGAGTGCTGGGATTAAGTTAGTTGCCAAAAAATTGATCATTCATTCAAAGTAG 1398 0.4506 MGSLAAEDRSEIAFFDLETTVPTRPGQGFAILEFGAILVCPRKLTELRNYSTLVRPADLSLISPLSERCNGITPDAVSSAPTFADIADTVYDLLHGRIWAGHNIIRFDCVRLRDAFAAINQPPPEPKGTIDSLVLLTQKFGRRAGNMKMATLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESSLPDIFTENSWVSPNATTRSRSNGKSPSEGGLLNINKDTVFNMLELKDRLNGESIQTDVAMDEKLLQDLPDTSSASSVNQASSSSTAVLELDEISIPAIDASLVPSFLGSQRIELHHNGFSFQLHCTGLKVRFGISTKFVDSAGRPRLNFVVDASPSLCDVLDACDRVAQKLSSDSGSSSDWRPVVIRKEGFFNYPTIRLHIPTAVFENVALYATEIYQRETSGTVQRLLFSKFDAAELGSMFMPGTFVDAFFSLDLYDYQQSAGIKLVAKKLIIHSK* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2130 465 CDD DEDDh 13 177 - -
Lja4g2130 465 Gene3D - 5 183 IPR036397 GO:0003676
Lja4g2130 465 Pfam Exonuclease 14 176 IPR013520 -
Lja4g2130 465 PANTHER DNA POLYMERASE III SUBUNIT EPSILON 256 464 - -
Lja4g2130 465 PANTHER DNA POLYMERASE III SUBUNIT EPSILON 3 218 - -
Lja4g2130 465 SUPERFAMILY Ribonuclease H-like 11 181 IPR012337 -
Lja4g2130 465 SMART exoiiiendus 11 185 IPR013520 -
Lja4g2130 465 PANTHER PROTEIN NEN3 256 464 - -
Lja4g2130 465 PANTHER PROTEIN NEN3 3 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2130 Lja-Chr4 22837715 22841419 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2130 - - ccaj:109808157 750.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2130 4 22837715 22841419 Lja4g2130 4 22837715 22841419 ECH