Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2102 ATGTTTAGTTCAAAGAAATCTCCTGTGAAGGTTGCTAAGCCTAGCTCTGTTGGTCCGGTGTATCCTGTTAAATCCGGGTCGAACCCATTTGATTCGGATGATGAGGGAAATGATAACAAAAAGTATAATTCCTCACGGAAGACCTCCTCAGAACGTGCACTTGCTACGCTAGAAGTTAACACCAATCCTTTTGATGACGTTGATGATACTAAGAAACCTTCATCATCTTTGTATGCCGCTCCATCCGCTGACAGGAACAGATATAGGAATGATTTTCGTGAATCTGGTGGAGTAGAGAATCAGTCGGTGCAGGAATTGGAAAGTTATGCTGTTTATAAGGCTGAAGAGACTACAAAATCAGTCAACAATTGTTTGAAGATAGCAGAGAACATAAGAGAGGATGCTACCAAGACTTTAGTCACTCTTCACCAACAGGGTGAGCAAATTACCAGGAGTCACTATGTTGCTGCTGACATTGATCATGACTTAAGTCGGGGAGAAAAGCTTTTGGGAAGCCTTGGTGGCCTCTTCTCCAAAACTTGGAAGCCGAAGAAGACACGTGCAATAAGAGGCCCTGTTATTTTTGGAGATAATCCAGTTAGCAGACAGGCCAACCACTTGGAACAGAGAGAGAAGTTGGGATTGACTTCTGCACCCAGAGGGCAAACTAAGATGCGAACCCCACCTCACGAATCATCAACTGCACTTCAAAAAGTTGAGTTTGAAAAAGGGAAGCAAGATGATGCACTTTCGGATTTAAGTGATCTGTTGGGAGAGCTTAAAGACATGGCCATTGACATGGGATCCGAAATTGAGAGGCACAATAAAGCTCTGAGCCATCTAGATGATGATGTGGAAGAGTTGAATTTCCGAGTGAAAGGTGCTAATCAAAGAGGCCGTCGTTTGCTTGGAAAATAA 918 0.4336 MFSSKKSPVKVAKPSSVGPVYPVKSGSNPFDSDDEGNDNKKYNSSRKTSSERALATLEVNTNPFDDVDDTKKPSSSLYAAPSADRNRYRNDFRESGGVENQSVQELESYAVYKAEETTKSVNNCLKIAENIREDATKTLVTLHQQGEQITRSHYVAADIDHDLSRGEKLLGSLGGLFSKTWKPKKTRAIRGPVIFGDNPVSRQANHLEQREKLGLTSAPRGQTKMRTPPHESSTALQKVEFEKGKQDDALSDLSDLLGELKDMAIDMGSEIERHNKALSHLDDDVEELNFRVKGANQRGRRLLGK* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2102 305 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 1 305 - -
Lja4g2102 305 SUPERFAMILY SNARE fusion complex 239 303 - -
Lja4g2102 305 SMART tSNARE_6 106 173 IPR000727 -
Lja4g2102 305 SMART tSNARE_6 235 302 IPR000727 -
Lja4g2102 305 Coils Coil 271 291 - -
Lja4g2102 305 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 1 305 - -
Lja4g2102 305 MobiDBLite consensus disorder prediction 31 47 - -
Lja4g2102 305 CDD SNARE_Qc 245 301 - -
Lja4g2102 305 MobiDBLite consensus disorder prediction 1 100 - -
Lja4g2102 305 SUPERFAMILY SNARE fusion complex 101 171 - -
Lja4g2102 305 CDD SNARE_SNAP25N_23N_29N_SEC9N 109 172 IPR044766 GO:0005484|GO:0031201
Lja4g2102 305 Gene3D - 237 304 - -
Lja4g2102 305 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 245 302 IPR000727 -
Lja4g2102 305 Gene3D - 96 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2102 Lja-Chr4 22582316 22585323 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2102 K18211 - gmx:100809874 466.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2102 4 22582316 22585323 Lja4g2102 4 22582316 22585323 ECH