Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2093 ATGAATCCTGACAAATTCACCCACAAGACAAATGAAGCTCTTGCTGGGGCTCATGAACTGGCAATGAGTTCTGGACATGCTCAGATGACTCCTCTGCACCTAGCAAGCACCTTGATTTCTGACCCTAATGGCATTTTCTTCCAAGCAATTTCCAATTCCAGTGGAGAAGAATCTGCACGTGCTGTGGAGAGGGTTTTGAACCAGGCTTTGAAGAAGTTACCTTCTCAGTCCCCTCCTCCTGATGAGATTCCGGCGAGCACGACGCTTATTAAGGCCATTCGGAGAGCACAGGCGGCGCAGAAGTCCAGGGGTGATACACATTTAGCAGTGGATCAGTTGATTTTGGGCATTCTTGAGGATTCTCAAATTGGTGACTTGTTGAAGGAAGCTGGTGTGGCTGCTGCTAAGGTTAAATCAGAGCTTGACAAGCTTCGTGGGAAGGTAGGGAAGAAGGTTGAGAGTGCATCTGGTGATACTACTTTTCAGGCTTTGAAGACTTATGGGAGAGACCTTGTGGAGCAAGCAGGGAAGCTTGATCCAGTAATTGGGCGTGATGAGGAGATAAGAAGGGTTGTGAGGATTTTGTCAAGGAGGACTAAGAATAACCCGGTTCTGATTGGAGAGCCTGGTGTTGGTAAAACTGCTGTGGTGGAAGGCTTGGCACAGAGGATTGTTAGAGGGGATGTTCCCAGCAATCTTTCTGATGTTAGGCTTATTGCATTGGACATGGGTGCTTTGGTTGCTGGTGCTAAGTATAGGGGAGAATTTGAGGAGAGGTTGAAGGCAGTTTTGAAAGAAGTGGAGGAGGCTGAGGGGAAAGTTATTCTGTTCATTGATGAAATTCATCTGGTTCTTGGTGCTGGTAGGACTGAAGGATCGATGGATGCTGCCAACCTTTTTAAGCCTATGCTTGCTCGCGGCCAGCTTAAGTGTATCGGTGCCACAACGCTCGAGGAGTATAGGAAGTATGTGGAGAAGGATGCAGCATTTGAAAGGAGGTTCCAACAGGTTTATGTGGCTGAACCTAGTGTGCCTGACACCATTAGCATCCTTCGTGGACTAAAAGAGAGGTATGAAGGTCATCATGGTGTTCGGATTCTGGACCGTGCTCTTGTTGTGGCAGCTCAATTGTCTAGTCGGTACATTACAGGGCGTCATCTTCCTGATAAGGCAATTGATTTAGTTGATGAGGCTTGTGCAAATGTGAGAGTTCAACTTGATAGCCAGCCTGAGGAAATTGATAACCTTGAAAGGAAGAGAATGCAGTTGGAAGTTGAACTTCATGCTTTGGAGAAAGAGAAGGACAAAGCTAGTAAAGCTCGCCTTGTAGATGTGAGGAGAGAACTTGATGACTTGAGAGACAAGCTTCAACCTCTGATGATGAAGTATAGAAAAGAGAAGGAGAGGGTTGATGAGATTCGAAGGCTCAAGCAGAAAAGAGAAGAGCTTCTCTTTGCTGCACAAGAGGCTGAAAGACGATACGATCTAGCCAGAGCTGCTGACCTGCGATATGGTGCAATTCAAGAGGTGGAATCTGCAATTCAGCAGCTCGAAGGGAGCACTGATCAGGAGAACTTAATGTTGACAGAAACTGTTGGTCCAGATCAAATATCTGAGGTTGTGAGCCGCTGGACCGGTATTCCAGTGACAAGGCTTGGCCAAAATGAGAAAGAAAGGTTGATTGGACTTGGTGATAGACTGCACAACAGAGTTGTAGGGCAAGACCAGGCTGTTAATGCTGTTGCTGAGGCTGTATTGAGATCAAGAGCTGGACTCGGGAGACCTCAACAACCAACTGGTTCATTCCTGTTTTTGGGTCCAACTGGTGTTGGCAAAACTGAACTTGCAAAGGCTCTTGCTGAGCAACTGTTTGATGATGAAAACCAGTTGGTGAGGATTGACATGTCTGAATACATGGAACAGCATTCTGTCTCAAGACTGATTGGTGCACCACCAGGGTATGTTGGACATGAGGAAGGTGGTCAGTTAACTGAAGCAGTGAGGCGTAGGCCTTACAGTGTGGTACTTTTTGATGAAGTGGAAAAGGCACACACATCTGTTTTCAATACACTTCTTCAAGTTTTGGATGATGGAAGATTAACTGATGGGCAAGGCCGTACTGTGGACTTCAGAAACACTGTCGTTATCATGACCTCAAACCTTGGAGCAGAGCACCTCCTAAGTGGACTTTCAGGAAAATGTTCCATGCAAGTTGCTCGTGATAAAGTAATGCAGGAGGTGAGAAAGCATTTTAGGCCAGAATTGTTGAATCGGCTTGATGAGATTGTAGTGTTTGATCCTCTTTCACATGAGCAATTGAGGAAGGTTGCAAGGTTACAAATGAAGGAGGTTGCTAGTAGACTTGCTGAGAGAGGAATAGCCATGGCAGTAACAGATGCAGCATTAGATTATATACTTGCTGAGAGCTATGATCCTGTTTATGGTGCTAGACCAATTAGGAGGTGGCTTGAGAGGAAAGTGGTGACAGAGCTTTCCAGAATGCTTATAAGGGATGAAATTGATGAGAACTCAACAGTGTACATCGATGCTGGCACCAAGGGTAGTGAGTTGGTCTACCGTGTAGAGAAGAATGGTGGGCTGGTTAATGCTGCAACTGGTCAGAAGTCTGATATCTTGATTCAGATACCTAATGGACCAAAAAGTGATGCTGCTCAAGCTGTGAAGAAGATGAGGATTGAGGAAATTGATGATGGTGAGATGGAAGAGTGA 2730 0.4582 MNPDKFTHKTNEALAGAHELAMSSGHAQMTPLHLASTLISDPNGIFFQAISNSSGEESARAVERVLNQALKKLPSQSPPPDEIPASTTLIKAIRRAQAAQKSRGDTHLAVDQLILGILEDSQIGDLLKEAGVAAAKVKSELDKLRGKVGKKVESASGDTTFQALKTYGRDLVEQAGKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLSDVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLKCIGATTLEEYRKYVEKDAAFERRFQQVYVAEPSVPDTISILRGLKERYEGHHGVRILDRALVVAAQLSSRYITGRHLPDKAIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEVELHALEKEKDKASKARLVDVRRELDDLRDKLQPLMMKYRKEKERVDEIRRLKQKREELLFAAQEAERRYDLARAADLRYGAIQEVESAIQQLEGSTDQENLMLTETVGPDQISEVVSRWTGIPVTRLGQNEKERLIGLGDRLHNRVVGQDQAVNAVAEAVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDDENQLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHTSVFNTLLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGAEHLLSGLSGKCSMQVARDKVMQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKEVASRLAERGIAMAVTDAALDYILAESYDPVYGARPIRRWLERKVVTELSRMLIRDEIDENSTVYIDAGTKGSELVYRVEKNGGLVNAATGQKSDILIQIPNGPKSDAAQAVKKMRIEEIDDGEMEE* 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2093 909 CDD AAA 572 767 - -
Lja4g2093 909 Gene3D - 344 545 IPR027417 -
Lja4g2093 909 Gene3D - 150 343 IPR027417 -
Lja4g2093 909 Gene3D - 768 867 - -
Lja4g2093 909 Pfam C-terminal, D2-small domain, of ClpB protein 768 848 IPR019489 -
Lja4g2093 909 PANTHER ATP-DEPENDENT CLP PROTEASE 4 863 - -
Lja4g2093 909 Coils Coil 473 493 - -
Lja4g2093 909 PANTHER CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC 4 863 - -
Lja4g2093 909 CDD AAA 182 337 - -
Lja4g2093 909 SUPERFAMILY Double Clp-N motif 4 158 IPR036628 -
Lja4g2093 909 SMART ClpB_D2_small_2 768 859 IPR019489 -
Lja4g2093 909 SMART AAA_5 199 344 IPR003593 -
Lja4g2093 909 SMART AAA_5 598 769 IPR003593 -
Lja4g2093 909 Pfam Clp amino terminal domain, pathogenicity island component 96 146 IPR004176 -
Lja4g2093 909 Pfam Clp amino terminal domain, pathogenicity island component 17 55 IPR004176 -
Lja4g2093 909 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 676 694 IPR001270 GO:0005524
Lja4g2093 909 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 709 723 IPR001270 GO:0005524
Lja4g2093 909 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 647 665 IPR001270 GO:0005524
Lja4g2093 909 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 602 620 IPR001270 GO:0005524
Lja4g2093 909 ProSitePatterns Chaperonins clpA/B signature 1. 295 307 IPR018368 GO:0005524
Lja4g2093 909 ProSiteProfiles Clp repeat (R) domain profile. 3 147 IPR004176 -
Lja4g2093 909 Gene3D - 3 148 IPR036628 -
Lja4g2093 909 Pfam ATPase family associated with various cellular activities (AAA) 204 317 IPR003959 GO:0005524|GO:0016887
Lja4g2093 909 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 546 IPR027417 -
Lja4g2093 909 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 547 850 IPR027417 -
Lja4g2093 909 Pfam AAA lid domain 344 443 IPR041546 -
Lja4g2093 909 Coils Coil 253 273 - -
Lja4g2093 909 Pfam AAA domain (Cdc48 subfamily) 598 762 IPR003959 GO:0005524|GO:0016887
Lja4g2093 909 ProSitePatterns Chaperonins clpA/B signature 2. 632 650 IPR028299 -
Lja4g2093 909 Gene3D - 551 767 IPR027417 -
Lja4g2093 909 Coils Coil 406 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2093 Lja-Chr4 22490694 22494830 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2093 K03695 - gmx:732632 1618.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2093 4 22490694 22494830 Lja4g2093 4 22490694 22494830 ECH