Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2080 ATGGCAGAACCAGAACCACAAACACGAAGAACCTCATCACCATCATCATCTTCAACCATTCTGGACCATTTGGGCGAGGAACTTGTTCGAATCATCGCCCCAGTTTCAATCTGCATGTTCCTCGTCGTCATCCTGGTCTCGATTCTCAACACTGGCTCTTCCTTCGAACGACCCACCTCCATAGCCACCATAGCATACGACGAGTCGACCATCGACTCCTCGTGGGACAAATTCCTCGGCGCCCTTCTCAACTCCCTAGCTTTCGTCGCTATGGTCACCTTCGCAACCTTCATCCTCGTCCTCCTCTTCTATTTCAGGTGCACGCGGTTTCTCAAGCTCTACATGGCCTTCTCATCTTTCGTCGTGCTCGCGTTCCTCGGCGGCGCGGTGTCGCTGTTCTTGATCCAGCACTTTGGTACCCCTATTGATTGCGTGACGTTCTTTCTGGTTTTGTGTAATTTCGCTGTGGTGGGGGTTATGGCGGTGTTCATGTCGAAATTTGCGATTGTAGTGACGCAGGGGTACTTGGTTGTTATTGGGATTCTGGTTGCTTACTGGTTTACCATGTTGCCTGAGTGGACTACATGGGCTATGCTTGTTGCTATGGCGTTGTATGACCTTGCTGCTGTTCTTTTGCCTGTTGGGCCGCTGAGGATTTTGGTCGAGCTTGCTATAACAAGGGATGAAGAGATTCCAGCTTTGGTTTATGAGGCTAGGCCAGTGAACCATGATAATGTGGATCCTAGGGAGGTTGTAGCTCAGAGAAGGATGTGGAGAGATAGGAGGATTCAGAATTCGGATGGTCGTGGTCTCAGTGCTGAACAATCACACTTTAATTCGGATGCAAGTACTGTTCTTAATTCAAATTCGAACAGCAATGTTCCGGTTGGCACGAGTTTAGATAGGGAGAATGGTTCAAACTTGAACACTAATAGTAATAGTACTACTTATGGTAACTCTAGTGATAGAAATTTGGTAAGAGCTGAAGAGGGGCGGTTACCGATTCGAGAGACTAATTCAGAACTCTCTACGCCCTTGATTGGTAATGCTGCGAATGTCCAGCTCCGTAGAGCAGAAGATGAGCTGGATGAAAGTTTGATGCTGGAGGGAATTGGATTAGGTTCATCTGGAGCAATCAAGTTGGGGCTTGGTGATTTTATCTTCTATAGTGTTTTGGTTGGCAGGGCGGCAATGTATGATTTTATGACGGTGTATGCATGTTATCTTGCTATCATTGCTGGTCTGGGCATTACTCTCATGCTTTTGGCTTTGTATCAGAAAGCTTTGCCTGCTCTTCCTGTGTCAGTAGCTCTGGGTGTGTTGTTTTATTTCCTGACCAGGCTCTTACTTGAAGTATTTGTAGTACAATGTTCCTTAAATCTCCTGATGTTTTAA 1395 0.4667 MAEPEPQTRRTSSPSSSSTILDHLGEELVRIIAPVSICMFLVVILVSILNTGSSFERPTSIATIAYDESTIDSSWDKFLGALLNSLAFVAMVTFATFILVLLFYFRCTRFLKLYMAFSSFVVLAFLGGAVSLFLIQHFGTPIDCVTFFLVLCNFAVVGVMAVFMSKFAIVVTQGYLVVIGILVAYWFTMLPEWTTWAMLVAMALYDLAAVLLPVGPLRILVELAITRDEEIPALVYEARPVNHDNVDPREVVAQRRMWRDRRIQNSDGRGLSAEQSHFNSDASTVLNSNSNSNVPVGTSLDRENGSNLNTNSNSTTYGNSSDRNLVRAEEGRLPIRETNSELSTPLIGNAANVQLRRAEDELDESLMLEGIGLGSSGAIKLGLGDFIFYSVLVGRAAMYDFMTVYACYLAIIAGLGITLMLLALYQKALPALPVSVALGVLFYFLTRLLLEVFVVQCSLNLLMF* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2080 464 MobiDBLite consensus disorder prediction 282 323 - -
Lja4g2080 464 PRINTS Presenilin family signature 32 42 IPR001108 GO:0004190|GO:0016021|GO:0016485
Lja4g2080 464 PRINTS Presenilin family signature 206 223 IPR001108 GO:0004190|GO:0016021|GO:0016485
Lja4g2080 464 PRINTS Presenilin family signature 189 196 IPR001108 GO:0004190|GO:0016021|GO:0016485
Lja4g2080 464 Pfam Presenilin 25 454 IPR001108 GO:0004190|GO:0016021|GO:0016485
Lja4g2080 464 PANTHER PRESENILIN 18 464 IPR001108 GO:0004190|GO:0016021|GO:0016485
Lja4g2080 464 SMART psh_8 79 450 IPR006639 GO:0004190|GO:0016021
Lja4g2080 464 Gene3D Presenilin 369 456 IPR042524 -
Lja4g2080 464 PANTHER PRESENILIN 18 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2080 Lja-Chr4 22389609 22391003 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2080 10 464 Miscellaneous Gene Families AT2G29900 57.768 3.47e-158 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2080 K04505 - gmx:100780823 620.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2080 4 22389609 22391003 Lja4g2080 4 22389609 22391003 ECH