LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja4g2074	ATGGCAACGCAGGAAGCAAGCCCTGCCACTGCTCCAAGTGCTCAAGTTGTTGGCCATGCCTTTGTGGAGCAATATTATCACATTCTGCATCAATCCCCGAACTTGGTGCACAGATTTTATCAGGAATCAAGTTTCTTAAGCAGATCAGATAGCAATGGTGTGATGACAACGGTGACAACTACGAAAGCAATCAATGAGAATATTATTTCCCTGAATTATGAAGATTATACAGCAGAAATTAAAACCGCAGATGCTCAGGAGTCGTATGAGAAAGGTGTGATTGTTTTAGTAACTGGATGCTTAACTGGGAAGGATAATGTGGGACGGAAGTTCTCGCAGACGTTCTTCCTTGCCCCACAAGATAAAGGATATTATGTCTTAAATGACGTGTTCAGGTATATTGAGGATAATGACACACCACAATTAAATTCTGTCCCAGTAAATATCATCAATGAAAATGTTGAGGCACACATACCAGAATCAGAGGATATACATGCTCCAAAACATCTTGTGGAAGATCCTACAACTTCTACTGAGGATGAAAACCTTAATGATGGTAATGAAGTTCATCATCCTCAGGACAACGAGGAAGAAGGATCCGTTATTGATGAAGAGGTTGCTGTAACCTCTGCTGATATAAGTCAGAATGATGTTGTTACTATTCGTGAGTCGACTTCTACAGTCCAGGATGATGCACCAAAGAAATTCTCATATGCATCAATTGTAAAAAGTAGCGCAGCACCTGGTCGTGTCTATGTTCCCAGCCGAGCTGCAAGGTTGGCATCTGCTAAATCCATTGAACAATCACCTGCTACTTCCAAATCTACGCCCGGGCCTGAGGCATTAGCTCCTAGTAGTGACAGTGTACCTGGGAGTAGCGATATTCATGAAGAAGCTGAAGGCCACTCCATATACATACGGAACTTGCCATTTAATGCAACAGTTGAGCAACTTGAAGAGGTCTTTAATAAATTTGGTCCTATTAAACATGGTGGAGTCCAAGTTAGAAGCAGTAAGCATGGATTCTGTTTTGGCTTCATTGAATTTGAGGATGCGAGCTCCATGCAAAGTGCACTTGAGGCTACACCTATTATTGTTGGTGAGCGACAAGCTGTTGTTGAGGAGAAGAGAACAACTACAAGAGTCAGCGGTAGTGGAAGAGGGAGGTATCCTTCAGGACGAGGCGGTTTCCGAAGCGAGAGCTTCAGGGGCGGCCGAGGGAAGTTTGGTGGTGGACGGGGATATGGCAGGAGTGAATTTAGAAGCCAAGGGGAGTTCTCGGGGAGACCGAGGAGTTCTCAACGGCCAAGTCAGAATGGAGGTGGGCGAGGTGGACGTGGTTTGGGAAACCGCGATTCAACAGTGTGA	1368	0.4474	MATQEASPATAPSAQVVGHAFVEQYYHILHQSPNLVHRFYQESSFLSRSDSNGVMTTVTTTKAINENIISLNYEDYTAEIKTADAQESYEKGVIVLVTGCLTGKDNVGRKFSQTFFLAPQDKGYYVLNDVFRYIEDNDTPQLNSVPVNIINENVEAHIPESEDIHAPKHLVEDPTTSTEDENLNDGNEVHHPQDNEEEGSVIDEEVAVTSADISQNDVVTIRESTSTVQDDAPKKFSYASIVKSSAAPGRVYVPSRAARLASAKSIEQSPATSKSTPGPEALAPSSDSVPGSSDIHEEAEGHSIYIRNLPFNATVEQLEEVFNKFGPIKHGGVQVRSSKHGFCFGFIEFEDASSMQSALEATPIIVGERQAVVEEKRTTTRVSGSGRGRYPSGRGGFRSESFRGGRGKFGGGRGYGRSEFRSQGEFSGRPRSSQRPSQNGGGRGGRGLGNRDSTV*	456

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja4g2074	455	MobiDBLite	consensus disorder prediction	376	455	-	-
	Lja4g2074	455	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	302	378	IPR000504	GO:0003723
	Lja4g2074	455	PANTHER	RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN	1	450	IPR039539	-
	Lja4g2074	455	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	304	361	IPR000504	GO:0003723
	Lja4g2074	455	PANTHER	RAS GTPASE-ACTIVATING BINDING-LIKE PROTEIN	1	450	-	-
	Lja4g2074	455	SMART	rrm1_1	303	374	IPR000504	GO:0003723
	Lja4g2074	455	CDD	RRM_SF	304	361	-	-
	Lja4g2074	455	MobiDBLite	consensus disorder prediction	183	197	-	-
	Lja4g2074	455	Gene3D	-	7	137	-	-
	Lja4g2074	455	MobiDBLite	consensus disorder prediction	172	199	-	-
	Lja4g2074	455	Pfam	Nuclear transport factor 2 (NTF2) domain	17	133	IPR002075	-
	Lja4g2074	455	Gene3D	-	287	384	IPR012677	-
	Lja4g2074	455	MobiDBLite	consensus disorder prediction	263	296	-	-
	Lja4g2074	455	ProSiteProfiles	Nuclear transport factor 2 domain profile.	17	133	IPR018222	-
	Lja4g2074	455	MobiDBLite	consensus disorder prediction	265	292	-	-
	Lja4g2074	455	MobiDBLite	consensus disorder prediction	425	440	-	-
	Lja4g2074	455	CDD	NTF2	13	135	IPR018222	-
	Lja4g2074	455	SUPERFAMILY	RNA-binding domain, RBD	299	408	IPR035979	GO:0003676
	Lja4g2074	455	SUPERFAMILY	NTF2-like	13	134	IPR032710	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja4g2074	Lja-Chr4	22342784	22350655	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja4g2074	K24983		-	gmx:100801253	644.039

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja4g2074	4	22342784	22350655	Lja4g2074	4	22342784	22350655	ECH