Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2071 ATGCGGTGGGAAAAGGTTCAGGTGAACCCCATATCAGGGGTAGCTGAAGCAGGAAGCGTGGTTTCTCCGCCGGGGAGAAGGTGGGGACACACCTGTAACGCTATCAAAGGTGGCAGACTTGTCTATCTCTTCGGTGGTTACGGCAAAGATAACTGTCAGACCAACCAGGTTCATGTTTTTGACACTGTGAAGCAGACTTGGAGCCTGCCCCCGGTGAAGGGGACTCCACCTACTCCTAGAGACAGCCATTCTTGCGCAGTCATTGATGATAATCTATATGTGTTTGGGGGTACAGATGGGACCAACCCGCTGAAGGATTTGCACATATTAGACACTTCTTCACATACATGGATTTCTCCAAGTATAAAAGGAGAAGGGCCAGAGGCACGTGAGGGTCATAGTGCAGCAGTTGTTGGCAAACGGCTATACATCTTTGGTGGTTGTGGAAAATCTGCAGATAACAACAATGAGGTCTACTACAATGATCTTTACATATTGAATACAGAGACGTTTGTTTGGAAGTGTGCTACAACATCAGGCACTCCACCATCTCCTCGTGATAGCCACAGTTGCTCCTCTTGGAAAAACAAAATCATTGTGGTAGCGGGTGAAGATAGCCGTGATTATTATTTGTCTGACGTCCATATCCTTGATACTGATACTCTAATTTGGAGGGAGCTGGTCACTTCAGGCCAAAGGTTGACACCACGAGCTGGTCATTCCACAGTTTCTTTGGGCAAGAACTTGTTTGTTTTTGGTGGATTTACGGATACCCAAAATCTATACAATGACCTTTATATGCTTGATATTGATACTGGTATTTGGACAAATGTTACAACTACAACCAATGGTCCTTCAGCCAGATTTTCTGTAGCTGGTGACTGTTTGGACCCATTTAACGGTGGTGTTCTAGTGTTCATTGGTGGTTGTAATAAAAGTCTCGAGGCCCTGGATGATATGTATTATCTGCATACAGGGATTGCTAGGGGAAGTGAACAGAGACCAGAGAAGTTATCTTTAAGGAAGCAATTGAAGCTGAAATGCCAAGAACAAAATCTCAATCCTGGCCAAAATCAAGGTCTTGCTAGATATGGAATGGGTGCTGATACTAGCCCGATCATGACCGTGTTGAAGTATACCCAGCCAGGTAGACAAAATATCCCAGTAAACCAATCCCTGCTTCATTCTGGAAAGAAAATGTTTGAAGCCAAGGTTTCTGAAAACATCTCAGATGGAGGATTAACTATTGAAACTGTTATTGATGGAAAGCCGCTACGCGGAGTTCTGTTTTTAAACAAGCCAAACTCTTTGAACCCAGCTGGTCTTGCCTTCAGTAGGAAGAGGACTGCTAGTGAAATTGATGGTGTTATCTCAAACGGTACACACCCTAACATATTCAAGACTCCTAAAGTGCTTAAGCAAAATCAAATGGAAAATAGACAGTCAGTTCATGGAGACAGTTCAGAATCTCATGAACACGGTTCTGGAGCTGTTTCTGCGCTTACACCAAATAACCCAATTACTGCCACTGCTTCTGATACCTATAAGGTTTCTGCGAATCCAGAACCAGAAGGCGCTTTGTTGAATCAAAATGACGAAAAACGTGAAACACCAACATTAGGGGAAAACTTGAGAAGTGATGGAGCAAATGACAGTTCCAAAGGTGAAGCCCAGACAAATTATCAAACAATTGTTCCCATTTCCAACTTAGAAGTTCCAACAGATGATAAAAAAAGTGATGCACCAAACGGCAAAACAGAATTTCTGGAACCTGCACCAACTGCGTGTTTCTCAAATCAAGGTGCAGTGGCGGATTCCTCAATTCCAAGGACAGGAGAGTGCAGTGAACCAGCAAAATGA 1860 0.4366 MRWEKVQVNPISGVAEAGSVVSPPGRRWGHTCNAIKGGRLVYLFGGYGKDNCQTNQVHVFDTVKQTWSLPPVKGTPPTPRDSHSCAVIDDNLYVFGGTDGTNPLKDLHILDTSSHTWISPSIKGEGPEAREGHSAAVVGKRLYIFGGCGKSADNNNEVYYNDLYILNTETFVWKCATTSGTPPSPRDSHSCSSWKNKIIVVAGEDSRDYYLSDVHILDTDTLIWRELVTSGQRLTPRAGHSTVSLGKNLFVFGGFTDTQNLYNDLYMLDIDTGIWTNVTTTTNGPSARFSVAGDCLDPFNGGVLVFIGGCNKSLEALDDMYYLHTGIARGSEQRPEKLSLRKQLKLKCQEQNLNPGQNQGLARYGMGADTSPIMTVLKYTQPGRQNIPVNQSLLHSGKKMFEAKVSENISDGGLTIETVIDGKPLRGVLFLNKPNSLNPAGLAFSRKRTASEIDGVISNGTHPNIFKTPKVLKQNQMENRQSVHGDSSESHEHGSGAVSALTPNNPITATASDTYKVSANPEPEGALLNQNDEKRETPTLGENLRSDGANDSSKGEAQTNYQTIVPISNLEVPTDDKKSDAPNGKTEFLEPAPTACFSNQGAVADSSIPRTGECSEPAK* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2071 619 MobiDBLite consensus disorder prediction 477 619 - -
Lja4g2071 619 Gene3D - 152 398 IPR015915 GO:0005515
Lja4g2071 619 Pfam Kelch motif 127 171 - -
Lja4g2071 619 Gene3D - 1 151 IPR015915 GO:0005515
Lja4g2071 619 Pfam Galactose oxidase, central domain 236 285 - -
Lja4g2071 619 Pfam Galactose oxidase, central domain 185 227 - -
Lja4g2071 619 Pfam Galactose oxidase, central domain 27 68 - -
Lja4g2071 619 PANTHER KELCH REPEAT DOMAIN 1 452 - -
Lja4g2071 619 SUPERFAMILY Galactose oxidase, central domain 21 227 IPR011043 -
Lja4g2071 619 MobiDBLite consensus disorder prediction 492 517 - -
Lja4g2071 619 PANTHER GALACTOSE OXIDASE/KELCH REPEAT SUPERFAMILY PROTEIN 1 452 - -
Lja4g2071 619 MobiDBLite consensus disorder prediction 543 569 - -
Lja4g2071 619 Pfam Kelch motif 79 117 IPR006652 GO:0005515
Lja4g2071 619 SMART kelc_smart 197 247 IPR006652 GO:0005515
Lja4g2071 619 SMART kelc_smart 248 301 IPR006652 GO:0005515
Lja4g2071 619 SMART kelc_smart 91 140 IPR006652 GO:0005515
Lja4g2071 619 SMART kelc_smart 40 90 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2071 Lja-Chr4 22309881 22319238 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2071 54 313 Acyl Lipid Metabolism Gene Families AT3G05420 30.037 5.70e-29 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2071 - - gmx:100820222 921.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2071 4 22309881 22319238 Lja4g2071 4 22309881 22319238 ECH