Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2062 ATGCGGCGACGGGCTGCCGATTATCGGCGCCCGGTTCGGCGGAGGTTATCTGATTGGATCTGGATTCTCCTTGCCTTCTTCTCTGTTCTCGGATTGCTTTTGTTCGTTCTGCACCACAATCACCAACAAGATCCGCCTCAGCATCCTTCTCCGGAGACAAATGCAAGAGTTGAACATTTTGCCAAGGACAGTCTGAATTTTACTGAAGAAATTTTAAGTGTGACATCATTTTCCCGCCAGTTAGCACAGCAAATGGTGCTGGCCAAGGCCTATGTGGTGATTGCCAAAGAACACAATAATCTACACCTTGCATGGCAGCTTAGTTCAAAGATCAGAAGTTGTCAACTCTTGCTTTCAAAAGCTGCCATGACTGGGGAGCCTGTCACGCTGGAGGAAGCAGAGCCAATTATTAAAAGCCTTTCTCTTCTAATTTTTAAGGCACAAGATATGCATTATGACATTGCAACCACCATAGTGACTATGAAATCACATATTCAAGCTCTTGAAGAGCGTGCCAATGCAGCAACAGTTCAAAGCACCGTGTTTGGTCAAATAGCAGCCGAAGCACTACCCAAAAGTCTTCATTGCCTGAATGTGAAACTCATGTCTGATTGGCTGAAGACACCATCCCTGCAAGAACTAGCAGATGAGAATAAGAACTCCCAAAGGCTCGTGGACAACAATCTATATCATTTCTGCATATTTTCAGATAATGTACTGGCGTCATCTGTAGTAGTTAACTCAACCGTCTCCAATGCTGATCATCCAAAGCAGCTGGTCTTTCATATTGTAACCAATGGAGTCAATTATGGAGGAATGCAAGCATGGTTCCTTGGTAATGACTTTAAAGGAGCCACCATAGAGGTACAAAACATTGAGGATTTTAATTGGTTGAATGCATCCTATTCTCCGATCGTCAAGCAGCTCCTTAATCCTGACTCACGAGCATTCTATTTTGGACTATATCAAGATATGAATGTTGAACCAAAAATGCGGAATCCCAAGTATTTGTTTTTGTTAAATCATCTTCGGTTCTACCTCCCTGAGATTTATCCGCAACTTGAGAAGGTTGTTTTCCTAGATGATGATCTTGTTGTCCAGAAGGATCTGACCTCTCTTTTCTCACTGGATTTGCATGGAAATGTGAATGGTGCAGTTGAAACTTGTCTCGAAGCATTTCATCGGTACTACAAGTATCTCAACTTCTCTAACCCAATTATAAGCTCGAGGTTTGATCCGCAGGCGTGTGCATGGGCATTTGGTATGAACATTTTTGACTTGGTTGCATGGAGGAAGGCAAACGTGACCGCAAGATATCACTATTGGCAAGATCAGAATGCTGATGGGACACTCTGGAAGCTGGGGACACTTCCCCCTGCTCTTCTATGTTTTTATGGTTTGACAGAACCACTTGATAGAAGATGGCATGTCTTAGGATTGGGTTATGATCTTAATATTGACAACCGCCTCATTGAAAGTGCAGCTGTTATTCACTTCAATGGGAACATGAAACCGTGGCTGAAGTTAGCTATAGGCAGGTATAAGCCTCTATGGGACAAGTATATAAATCAAAGTCACTCTCATCTTCAACATTGTAGCCCAAGTTGA 1608 0.4297 MRRRAADYRRPVRRRLSDWIWILLAFFSVLGLLLFVLHHNHQQDPPQHPSPETNARVEHFAKDSLNFTEEILSVTSFSRQLAQQMVLAKAYVVIAKEHNNLHLAWQLSSKIRSCQLLLSKAAMTGEPVTLEEAEPIIKSLSLLIFKAQDMHYDIATTIVTMKSHIQALEERANAATVQSTVFGQIAAEALPKSLHCLNVKLMSDWLKTPSLQELADENKNSQRLVDNNLYHFCIFSDNVLASSVVVNSTVSNADHPKQLVFHIVTNGVNYGGMQAWFLGNDFKGATIEVQNIEDFNWLNASYSPIVKQLLNPDSRAFYFGLYQDMNVEPKMRNPKYLFLLNHLRFYLPEIYPQLEKVVFLDDDLVVQKDLTSLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNPIISSRFDPQACAWAFGMNIFDLVAWRKANVTARYHYWQDQNADGTLWKLGTLPPALLCFYGLTEPLDRRWHVLGLGYDLNIDNRLIESAAVIHFNGNMKPWLKLAIGRYKPLWDKYINQSHSHLQHCSPS* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2062 535 CDD GT8_like_1 230 523 - -
Lja4g2062 535 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 232 532 IPR029044 -
Lja4g2062 535 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 3 535 IPR029993 GO:0047262
Lja4g2062 535 Pfam Glycosyl transferase family 8 234 509 IPR002495 GO:0016757
Lja4g2062 535 SUPERFAMILY Nucleotide-diphospho-sugar transferases 230 532 IPR029044 -
Lja4g2062 535 PANTHER HEXOSYLTRANSFERASE 3 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2062 Lja-Chr4 22126736 22130866 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2062 1 533 Glycosyltransferase AT2G20810 54.461 0.0 598
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2062 K13648 - gmx:100805886 973.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2062 4 22126736 22130866 Lja4g2062 4 22126736 22130866 ECH