Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2057 ATGTGTAGGCCGGAGAGTAAGAACAACAGGTGGCAAGATTTCCGTTGGATGGGTACGAAGGTGGAGAAGGAGAGAGGTGGACCAGGTTCAGGGTCATCGTCATCTTCATCTTCTTCATCAAGGTATAGAATGAAGCTTTGGTTGATACGCGGAACCGCATCGATTTTGTTGTGGACTTGCATCGTGCAGTTAACCGCTTTTGGTGATATGGGGTGGGGGCCGAGAGTGTTGAAAGGTTGGCCTTCTTGTTTTACTCACGACGACGAATCTTCCGCCGTCAGGGAAATCGACAGCATTGAGCTTCCATCTTCACGTCCACCACTTCTCCCTCCTAAGAGACTTTACAAGAACAATGGGTACCTTATGGTGTCGTGTAATGGAGGATTGAATCAAATGAGAGCCGCGATATGTGACATGGTGGCAATTGCAAGATATTTAAATGTCACGCTTATAGTCCCTGAATTGGATAAGACATCCTTTTGGGCTGATCCGAGTGAATTCCAGGACATATTTGATGTGGATCATTTTATCACGTCCTTGAGAGATGAGGTGCGGATATTGAAAGAGTTGCCTCCTAGAATCAAGCTGAGAGTGGAACAGGGGTTACATTACAGCATGCCACCGGTTAGCTGGTCTGACATATCTTACTATAAGCACCAGATTCTACCCTTGGTACAAAAGTACAAAGTTGTGCATTTAAATCGAACTGATGCTCGTCTGGCCAATAACGGTCAGCCTATGGAGATTCAGAAGCTGCGCTGCAGAGTTAATTTCAGTGCTTTGAGATTTACTCCTCAAATAGAGGAGTTGGGGAGAAAGGTGATCCAGCTTCTAAGGAAAAATGGTCCATTTCTGGTCCTTCATTTGAGGTATGAGATGGACATGTTGGCATTTTCTGGCTGTACTCAAGGTTGTAACCGTGATGAGGTTGAAGAGTTGACAAGAATGAGATATGCGTATCCTTGGTGGAAAGAAAAAATAATTAATTCTGACTTGAAAAGAAGAGACGGCCAATGTCCCTTAACACCTGAGGAGACTGCCCTTACGCTTAGGGCTCTTGACATTGATCGGAGTATTCAAATCTACATCGCAGCTGGGGAAATATATGGTGGGGAAAGGAGAACGGCAAGTCTTTTGAAGGAGTACCCGAAATTGGTTAGGAAGGAAACACTGTTGGAGCCATCTGACCTTCAGTTCTTCCAGAATCATTCATCTCAGATGGCAGCATTGGATTATCTTGTCTCATTAGAAAGCGATATTTTTGTCCCTACGTATGATGGAAATATGGCAAAAGTAGTTGAGGGCCATCGCAGATATCTCGGGTTCAAGAGAACAATTTTATTGAACAGAAGGCTCCTAGTTGATTTGATAGATCAGTACAACAATGGAGTACTGAACTGGGATGAATTCTCTTCAGCCGTGAAGGAATCTCATGCTGATCGCATGGGCAGCCCAAGTAAAAGGTTGGCAATCCTTGACAAACCAAAAGAAGAGGATTATTTCTACGCCAATCCACACGAGTGTTTAGAACCATCAAATGATCCGTTCAGTAGTACGTGA 1560 0.4423 MCRPESKNNRWQDFRWMGTKVEKERGGPGSGSSSSSSSSSRYRMKLWLIRGTASILLWTCIVQLTAFGDMGWGPRVLKGWPSCFTHDDESSAVREIDSIELPSSRPPLLPPKRLYKNNGYLMVSCNGGLNQMRAAICDMVAIARYLNVTLIVPELDKTSFWADPSEFQDIFDVDHFITSLRDEVRILKELPPRIKLRVEQGLHYSMPPVSWSDISYYKHQILPLVQKYKVVHLNRTDARLANNGQPMEIQKLRCRVNFSALRFTPQIEELGRKVIQLLRKNGPFLVLHLRYEMDMLAFSGCTQGCNRDEVEELTRMRYAYPWWKEKIINSDLKRRDGQCPLTPEETALTLRALDIDRSIQIYIAAGEIYGGERRTASLLKEYPKLVRKETLLEPSDLQFFQNHSSQMAALDYLVSLESDIFVPTYDGNMAKVVEGHRRYLGFKRTILLNRRLLVDLIDQYNNGVLNWDEFSSAVKESHADRMGSPSKRLAILDKPKEEDYFYANPHECLEPSNDPFSST* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2057 519 Pfam GDP-fucose protein O-fucosyltransferase 120 440 IPR019378 -
Lja4g2057 519 CDD O-FucT_plant 120 445 IPR024709 -
Lja4g2057 519 PANTHER GDP-FUCOSE O-FUCOSYLTRANSFERASE-LIKE PROTEIN 27 514 - -
Lja4g2057 519 PANTHER OS02G0726500 PROTEIN-RELATED 27 514 - -
Lja4g2057 519 PIRSF UCP009360 8 506 IPR024709 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2057 Lja-Chr4 22051085 22055043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g2057 116 515 Miscellaneous Gene Families AT2G37980 49.386 6.05e-132 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2057 K23280 - gmx:100793244 846.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2057 4 22051085 22055043 Lja4g2057 4 22051085 22055043 ECH