Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2053 ATGTCACGCACTCGCATTTCCATCCACCGCTTCCGCTACATCTACACCGCATTCTCCTCCTCACCACCACCAATTTCTCGCTTCCAATTCCAAAGCCACTTCTCCCTCCTCTCTTCCCTCTCTCATCCCACCCGCACACCCATCCCCTTCCCCTTCCACTCTTCTTGCTACTATTCCACTTCTGCTCCTCAACACGATCCTTCAGGCGACTGTTCCGATTACCCCACCGGCGACTTCGATTTCAAACCCCTCACTGGCTGGAAAAAGTTCACTGTCAAACTCAGGATGCTAACTGCATTCCCATGGCGGCGTATCCAATACGGCACCGTCTTGAAAATCAAATTGCGCGGCCAGTTTTCCGATCAGCTCAAGAGTAGATTCTCGAAGGGATTGTCTCTGCCTGAAATCTGTGAGAATTTGCTGAAAGCAGCGTGTGATCCTCGCATTTCCGGCGTCTATCTTCATATTGATAATTTGAATTGTGGCTGGGCTAAAATCGAAGAAATTCGGAGGCACATCCTCTATTTCAGAAAATCAGGAAAGTTTGTCGTGGCTTATGTCCCTTCATGTCGAGAAAAAGAATATTACATTGCGTGCGCTTGTGACGAAATATATGCCCCTCCAAGTGCTTATTTTTCTTTGTTTGGATTGACTGTTCAAGCCGCATTCCTCAGAGGTGTTCTAGACAACCTTGGAATTGAACCACAAGTGGAAAAGTTTGGCAAATATAAAAGTGCAGGCGAGCAACTAACCTGTAGAACCATGTCTGAAGATACTCGTGAGATGCTGACTGCATTGCTTGATAATATCTATACAAATTGGCTAGATAAAGTCTCTTCTTCTAGAGGCAAGAAAAGGGAAGATATTGAGAAATTCATAAACGAAGGTGTCTATCAACTAGACAGGCTGAAAGAAGAGGGCTTCATATCAAACATAATCTATGATGATGAGGTTCTTGCTATGTTGAAGGAGAGGCTTCAAGTGAAAACAGATAAAAATCTGCCCATGGTTGATTTGAGTAACCATAAGCAGGTGTTTTTTTCCCTCAAATACAGAAAATACTCAAGAGTTAGGAAGTCGACTTTGGGAATGTCAGGTGGTAAACAATTGATTGCCATCATCCGAGCCTCAGGGAGCATTCGTCGTGGTCAAAGTCCATTAAGCTCCCGTACTGCAGGTATCATTGGAGAAAAGTTCATTGAGAAGATTCGCCATGTCAGAGAGTCAAAAAAATACAAGGCTGTTATTATCCGAATTGACAGTCCAGGAGGCGATGCTCTTGCTTCTGATTTGATGTGGAGAGAAATCAGGCTCTTGGCTGCCTCTAAACCGGTTGTTGCTTCAATGTCTGATGTGGCAGCAAGTGGAGGGTACTACATGGCAATGGGAGCCGGGGCTATTGTTGCAGAAAGTCTTACCTTAACCGGTTCAATTGGAGTGGTTATAGGAAAATTTAACCTTGGAAAACTTTATGAGAAGATTGGCTTCAACAAAGAGATCATATCAAGGGGTAAATATGCTGAGCTCCTTGCCGCCGAACAGCGTTCTTTTAGGCCAGATGAAGCAGAGTTATTTGCCAAGTCGGCACAGAATGTATATAAACAATTTCGAGACAAGGCTGCCTTTTCCAGATCAATGACTGTAGATAAAATGGAAGAGGTTGCTCAGGGGAGGGTTTGGACAGGTAAGGACGCAGTTTCTCATGGTTTGGTTGATGCTATTGGTGGGCTTTCCCGAGCTATTGCCATAGCTAAAATGAAGGCCAATATACCTCAAGATACACAGGTTAGGATTGTGGAGCTCTCAAGACCCAGTCCTTCTCTACCTGAGATTTTAAGTGGTCTGGGTAATTCTATTATTGGAGTAGACAGAACTTTAAATGAACTGGTACAAGACTTCACATTTTCTGATGGAGTTCAAGCACGGATGGATGGAATCGTGTTTCAGAAATTGGAAGGATATCCATATTCCAACCCGATTTTGACATTGATAAAAGATTACCTCAGCTGA 2010 0.4388 MSRTRISIHRFRYIYTAFSSSPPPISRFQFQSHFSLLSSLSHPTRTPIPFPFHSSCYYSTSAPQHDPSGDCSDYPTGDFDFKPLTGWKKFTVKLRMLTAFPWRRIQYGTVLKIKLRGQFSDQLKSRFSKGLSLPEICENLLKAACDPRISGVYLHIDNLNCGWAKIEEIRRHILYFRKSGKFVVAYVPSCREKEYYIACACDEIYAPPSAYFSLFGLTVQAAFLRGVLDNLGIEPQVEKFGKYKSAGEQLTCRTMSEDTREMLTALLDNIYTNWLDKVSSSRGKKREDIEKFINEGVYQLDRLKEEGFISNIIYDDEVLAMLKERLQVKTDKNLPMVDLSNHKQVFFSLKYRKYSRVRKSTLGMSGGKQLIAIIRASGSIRRGQSPLSSRTAGIIGEKFIEKIRHVRESKKYKAVIIRIDSPGGDALASDLMWREIRLLAASKPVVASMSDVAASGGYYMAMGAGAIVAESLTLTGSIGVVIGKFNLGKLYEKIGFNKEIISRGKYAELLAAEQRSFRPDEAELFAKSAQNVYKQFRDKAAFSRSMTVDKMEEVAQGRVWTGKDAVSHGLVDAIGGLSRAIAIAKMKANIPQDTQVRIVELSRPSPSLPEILSGLGNSIIGVDRTLNELVQDFTFSDGVQARMDGIVFQKLEGYPYSNPILTLIKDYLS* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2053 669 Gene3D - 366 513 - -
Lja4g2053 669 Gene3D - 109 246 - -
Lja4g2053 669 Gene3D - 249 344 - -
Lja4g2053 669 CDD S49_SppA_67K_type 111 324 - -
Lja4g2053 669 PANTHER PROTEASE 4 36 668 - -
Lja4g2053 669 PIRSF Protease_4_SppA 55 669 IPR004634 GO:0006465|GO:0008233|GO:0016021
Lja4g2053 669 Pfam Peptidase family S49 176 328 IPR002142 GO:0006508|GO:0008233
Lja4g2053 669 Pfam Peptidase family S49 439 589 IPR002142 GO:0006508|GO:0008233
Lja4g2053 669 SUPERFAMILY ClpP/crotonase 106 314 IPR029045 -
Lja4g2053 669 CDD S49_Sppa_N_C 371 585 IPR002142 GO:0006508|GO:0008233
Lja4g2053 669 SUPERFAMILY ClpP/crotonase 371 576 IPR029045 -
Lja4g2053 669 TIGRFAM SppA_dom: signal peptide peptidase SppA, 36K type 372 585 IPR004635 GO:0006508|GO:0008233
Lja4g2053 669 Gene3D - 514 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2053 Lja-Chr4 21960291 21967439 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2053 K04773 - gmx:100809623 1002.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2053 4 21960291 21967439 Lja4g2053 4 21960291 21967439 ECH