Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2018 ATGCTACAAAACCCAAGAGTACTAGGATCTTCCCCTCAACCATTCAATCATCCACCAACTCGTACATCAGCACCACCTCCTTCATCATTACAACTATTACCCACTCTTCCAATCATCAAACAGCAATGCAGATTGTCACGTAGAGAGCTCACAATCCTCAGCAACTCTAGCTTGCTTCTTCTTTTGGGTGCTCAGGCAGTGGATGGAACCAAAGCAAGAGCAGAAGAAAATGTCGTCGAGCCAAGTAACAGTGATAAACCAGAAGAGAATTTAACTACCACAACCACTCCCAGCTGCACTGAAAGAAAACCTACTAAGAAAGTGTTTTTTGACATAGCCATTGATCGCGAACCTGTCGGTCGCATTACTATAGGGCTATATGGAGATGATGTCCCTGCAGGAGTTGATAGGTTTAGCAAGATTGTCAGTGGAGCTGCTGGTGTTAGCTACAGAAGAAAAGAGTTTGTCAAAATCCTGCCCAATTATGTCCAACACGGTGGACTTCGATCCTATGGCGTGGATGCAGAAATGGCCAGAGGGACAGGGGGTGATTTGGCAGCTGATAGTCTTGTTGAGGAATGGGAGAGAACTTATGAAGGGTGCCCTGGGACTAAAAATGTGGCTGGAAGTGTTGGCATTATTGTGAGAGACCCGTCTAAACCGCCTCCAAAGATGAAGCTGGTTGCAAGAATGGGGAAGCTGGAGATTGATCAAGAAGAAGTTGGAATTGATCCCAATGGGACAGAATTTGTCATTGCCACAAAGGATTCTCCAGAATTGGATGCATCATCTCTGGTAGTTGGAAGAGTATTAGAAGGGTTGGAGGTTGTGCAGAGGATTGGTCAGGTAAAAACCGTACAGGAGAATACGAGCTCTCCCTATTTTAGGGTGGCAAAGCTTATCGGAGACAAGAGGGCTGTTGTAGCAGAAAGGGGATTCAACCGCCCTTATTCGAAAGTTATTGTTACAAACTGTGGTATAATGGAGTAG 990 0.4535 MLQNPRVLGSSPQPFNHPPTRTSAPPPSSLQLLPTLPIIKQQCRLSRRELTILSNSSLLLLLGAQAVDGTKARAEENVVEPSNSDKPEENLTTTTTPSCTERKPTKKVFFDIAIDREPVGRITIGLYGDDVPAGVDRFSKIVSGAAGVSYRRKEFVKILPNYVQHGGLRSYGVDAEMARGTGGDLAADSLVEEWERTYEGCPGTKNVAGSVGIIVRDPSKPPPKMKLVARMGKLEIDQEEVGIDPNGTEFVIATKDSPELDASSLVVGRVLEGLEVVQRIGQVKTVQENTSSPYFRVAKLIGDKRAVVAERGFNRPYSKVIVTNCGIME* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2018 329 MobiDBLite consensus disorder prediction 73 102 - -
Lja4g2018 329 Gene3D - 96 329 IPR029000 -
Lja4g2018 329 SUPERFAMILY Cyclophilin-like 105 328 IPR029000 -
Lja4g2018 329 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 110 292 IPR002130 GO:0000413|GO:0003755
Lja4g2018 329 MobiDBLite consensus disorder prediction 84 102 - -
Lja4g2018 329 MobiDBLite consensus disorder prediction 1 17 - -
Lja4g2018 329 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 109 327 IPR002130 GO:0000413|GO:0003755
Lja4g2018 329 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP26-2, CHLOROPLASTIC 1 329 IPR044185 -
Lja4g2018 329 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2018 Lja-Chr4 20939322 20940599 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2018 K03768 - gmx:100800469 476.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2018 4 20939322 20940599 Lja4g2018 4 20939322 20940599 ECH