Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2006 ATGGGGGAAAACAACTTCGAAGATAAACTCCCTGAGCTCAAATTAGATTCTAAGCAAGCACAAGGGTTTCTGTCATTTTTCAAAACCCTAACTGATGACTCAAGGGCCATTCGGTTTTTTGATCGCCGGGACTATTATACTGCTCATGGTGAGAATGCAAATTTCATTGCCAAGACCTACTACCACACTACTACTGCTTTGCGACAACTGGGAAGTGGATTAGATGCTCTTTCCAGTGTAAGTGTCAGTAGGAACATGTTTGAAACAATTGCACGTGATTTGCTTTTGGAGAGAACAGATCATACTCTTGAGGTCTATGAGGGTAGTGGTTCTAATTGGAGACTGGTCAAAAGTGGAACCCCTGGTAATATTGGTAATTTTGAAGATGTTCTGTTTGCTAACAGTGAAATGCAAGATTCTCCAGTTATTGTTGCACTGTCGCTTAATTTCCGTGAAAATGGTTGCACCATTGGGTTAGGGTTTGTTGATCTAACTAAGAGAGTACTTGGGATGGCTGAGTTTCTTGATGATAGTCACTTCACGAATGTGGAGTCAGCTTTGGTTGCTCTTGGCTGCAAAGAGTGTCTTGTTCCCATTGAGTCTGGCAAATCTACTGAAAATAGAATGTTGTGTGATGTGCTGACAAAATGTGGTGCGATGTTAACTGAGAGAAAAAAATCTGAGTTTAAAACCAGAGATTTGGTACAGGATCTTGGCAGGCTTCTTAAAGGTTCTATTGAACCAGTTCGAGATTTGGTGTCTGGATTTGAATTTGCACCTGGTGCTTTGGGGGCATTACTATCTTATGCAGAGTTACTTGCAGATGAAAGCAATTATGAAAATTTTACTCTTCGTAGGTACAATCTTGATAGTTATGTGAGATTAGATTCTGCAGCCATGAGGGCACTTAATGTCCTGGAAAGCAAAACTGATGCAAACAAAAATTTCAGTTTGTTTGGTCTCATGAATAGGACCTGTACAGCTGGAATGGGAAAACGGTTATTGCACAACTGGCTAAAACAGCCATTACTAGATGTAAAAGAAATTAATTCCAGGCTGGATGTAGTACAAGCATTTGTAGAGGACCCTGTGCTACGCCAAGAACTGAGGCAGCATCTGAAAAGAATATCAGACATTGAGCGATTGGTGCACAATCTTCAGAAGCGAAGAGCTGGACTACAACATATTGTTAAGCTGTATCAGTCAAGTATAAGACTACCTTACATTAAAAGCACTCTGGAAGCATATGATGGACAATTTTCCTCAATGATGAAGAGTAGGTATTTGGAACCTCTCCAGTTATGGACTGATGACGATCACCTAAATAAATTTATTGGGCTTGTAGAAGCTTCTGTTGACCTTGATCAACTAGAGAACAGGGAATATATGATTGCTCCGAGTTATGATGCTACACTAACTAAACTAAAGGAGCAGCAAGAATTACTAGAGAGCCAAATACAGAACTTGCACAGACAAACTGCTGATGACCTTGATCTGCCTATAGACAAGGCATTAAAGTTAGATAAGGGCACCCAATTTGGACATGTTTTTAGAATCACAAAGAAAGAAGAGCCGAAAATAAGGAAAAAGCTCAACACCCAGTTTATTGTACTGGAAACCCGCAAAGATGGAGTTAAGTTTACTAACACAAAGCTCAAAAAATTGGGGGACCAGTACCAACAAATTCTTGAGGAGTACAAGAGTTGTCAAAAAGAGTTGGTTAATAGAGTAGTTCAAACGGCAGCAACTTTCTCTGAGGTCTTTGAATCTTTGGCTGAATTAATTTCAGAGTTGGATGTGTTACTAAGCTTTGCTGATTTGGCTTCTAGTTGTCCCACTCCCTACACAAGACCTGACATCACTTCATCGGATGAAGGAGACATAATTTTAGAAGGCAGCAGACACCCTTGTGTGGAGGCACAAGACTGGGTGAATTTTATACCAAATGATTGTAAGCTTATCAGAAGAAAAAGTTGGTTTCAAATAATAACAGGGCCTAACATGGGCGGGAAATCAACATTCATCCGGCAGGTGGGAGTGAATATTTTAATGGCACAAGTTGGTTCCTTTGTTCCCTGTGACAAAGCCAGCATATCTGTTCGTGATTGCATCTTTGCCCGTGTTGGTGCAGGTGACTGCCAACTTCGCGGAGTCTCAACCTTTATGCAAGAAATGCTTGAAACTGCATCAATATTAAAAGGAGCTACTGACAAGTCCTTGATAATCATTGATGAGCTGGGACGTGGAACATCAACTTATGATGGATTTGGTCTAGCTTGGGCCATTTGTGAGCACATTGTTGAAGTGATCAAAGCACCTACATTGTTTGCAACCCATTTTCATGAACTGACTGCATTAGCCCTTGAAAATGTAAGCGATGATCCACATAAGCAAATTGTTGGTGTGGCAAATTATCATGTTAGTGCACATATTGATGAGTCAACTCGGAAGCTAACCATGCTATACAAGGTTGAACCAGGAGCATGTGATCAGAGTTTTGGTATTCACGTTGCTGAGTTTGCAAACTTCCCTGAAAGTGTTGTTGCACTAGCTAGAGAAAAGGCAGCAGAATTGGAAGATTTTTCTCCTTCTGCCATATCCTTAATTGATACCACAGAGCAGGCGGGTTCTAAACGTAAGAGAGTATTTGAATCTGATGACATGTCTCAAGGGGTTGCAAAGGCTCGCCAAATTCTTGAGGCATTTGTTGCTTTGCCACTAGAAACCATGGACAAAAGCCAAGCCTTGCAAGAAGTAAGCAAGTTAAAAGACACTTTAGAGAAGGATGCCGAAAACTGTCATTGGCTGCAAAAGTTCTTGTAG 2823 0.4077 MGENNFEDKLPELKLDSKQAQGFLSFFKTLTDDSRAIRFFDRRDYYTAHGENANFIAKTYYHTTTALRQLGSGLDALSSVSVSRNMFETIARDLLLERTDHTLEVYEGSGSNWRLVKSGTPGNIGNFEDVLFANSEMQDSPVIVALSLNFRENGCTIGLGFVDLTKRVLGMAEFLDDSHFTNVESALVALGCKECLVPIESGKSTENRMLCDVLTKCGAMLTERKKSEFKTRDLVQDLGRLLKGSIEPVRDLVSGFEFAPGALGALLSYAELLADESNYENFTLRRYNLDSYVRLDSAAMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHNWLKQPLLDVKEINSRLDVVQAFVEDPVLRQELRQHLKRISDIERLVHNLQKRRAGLQHIVKLYQSSIRLPYIKSTLEAYDGQFSSMMKSRYLEPLQLWTDDDHLNKFIGLVEASVDLDQLENREYMIAPSYDATLTKLKEQQELLESQIQNLHRQTADDLDLPIDKALKLDKGTQFGHVFRITKKEEPKIRKKLNTQFIVLETRKDGVKFTNTKLKKLGDQYQQILEEYKSCQKELVNRVVQTAATFSEVFESLAELISELDVLLSFADLASSCPTPYTRPDITSSDEGDIILEGSRHPCVEAQDWVNFIPNDCKLIRRKSWFQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHIVEVIKAPTLFATHFHELTALALENVSDDPHKQIVGVANYHVSAHIDESTRKLTMLYKVEPGACDQSFGIHVAEFANFPESVVALAREKAAELEDFSPSAISLIDTTEQAGSKRKRVFESDDMSQGVAKARQILEAFVALPLETMDKSQALQEVSKLKDTLEKDAENCHWLQKFL* 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2006 940 PIRSF MSH2 6 940 IPR011184 GO:0005524|GO:0006298|GO:0030983
Lja4g2006 940 CDD ABC_MSH2_euk 629 859 - -
Lja4g2006 940 SMART mutATP5 658 856 IPR000432 GO:0005524|GO:0006298|GO:0030983
Lja4g2006 940 Coils Coil 552 572 - -
Lja4g2006 940 Pfam MutS domain III 299 605 IPR007696 GO:0005524|GO:0006298|GO:0030983
Lja4g2006 940 ProSitePatterns DNA mismatch repair proteins mutS family signature. 739 755 IPR000432 GO:0005524|GO:0006298|GO:0030983
Lja4g2006 940 Pfam MutS domain II 142 282 IPR007860 GO:0005524|GO:0006298|GO:0030983
Lja4g2006 940 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 615 860 IPR027417 -
Lja4g2006 940 Gene3D MutS, connector domain 121 290 IPR036678 GO:0005524|GO:0006298|GO:0030983
Lja4g2006 940 Gene3D - 522 615 - -
Lja4g2006 940 Gene3D - 294 521 - -
Lja4g2006 940 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 22 925 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Lja4g2006 940 Coils Coil 912 932 - -
Lja4g2006 940 Coils Coil 369 389 - -
Lja4g2006 940 PANTHER DNA MISMATCH REPAIR PROTEIN MSH2 22 925 IPR032642 GO:0003677|GO:0005524|GO:0006298|GO:0032300
Lja4g2006 940 SMART DNAend 313 641 IPR007696 GO:0005524|GO:0006298|GO:0030983
Lja4g2006 940 Pfam MutS domain V 661 859 IPR000432 GO:0005524|GO:0006298|GO:0030983
Lja4g2006 940 Pfam MutS domain I 22 127 IPR007695 GO:0005524|GO:0006298|GO:0030983
Lja4g2006 940 Gene3D DNA repair protein MutS, domain I 7 120 IPR016151 GO:0005524|GO:0006298|GO:0030983
Lja4g2006 940 SUPERFAMILY DNA repair protein MutS, domain III 296 610 IPR036187 -
Lja4g2006 940 Gene3D - 616 937 IPR027417 -
Lja4g2006 940 Coils Coil 472 495 - -
Lja4g2006 940 Pfam MutS family domain IV 468 565 IPR007861 GO:0005524|GO:0006298|GO:0030983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2006 Lja-Chr4 20744558 20753010 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2006 K08735 - gmx:100792272 1716.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2006 4 20744558 20753010 Lja4g2006 4 20744558 20753010 ECH