Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g2003 ATGAGTCACACAACAAGCAGGAAACCTCAGAACGGTCATCACAAGCAAGACGATTCACCTTCTGCTGATGGGTCTGTTGGAAAAGGAGAGAACTCGCTCTCTGATGCAGCTGCAGCAGTAGCAGACTCTGACACCCTTCAACCTGAAGCCAAGAAAAGGGCCAGGGTGCAGAAGGAGTTGACTTTTCAGGACATTTGTCAGAATCAAGACATATTTGACGATGACGATGAGGATGACATTGATTGGGAGCCGGTTCCGGTTCCACTGGAGGAGGTTGTGGAAGTCACAAAGTGGGTCTGCAAAAATTGTACCGGGATTAGCCTCAGTCATTATGACTGTTGTATGATATGTGGGGAACATAAGGATTCGAAAATCGTGAGCCGTGGTTTTTTCGCATCTCCGTTTGCGCAAGATGATGATTCGGCAGTGGTCCAGTCAAATGCAAAAGATGTTAGTTCGCAAGAATCAGCGGCAAATAGTTCTACGGCTATCGGCTTTGATGAGAGAATGTTGTTACATGAAGAAGCTGACAAGAAATCACATCCACATCCAGAAAGGCCAGATCGTCTTCGAGCCATTGCTGCTAGTCTTGCTAGAGCTGGTATTTTTCCTGGGAGATGCTATCCAATTCCTGCTCGAGAAATCACTCGAAAAGAACTTACAACGGTTCATTCGTTGGAGCATATTGATTCCGTTGAAGTTACAAGCAGTTTATTATCTAGTTATTTCACTGCTGACACATATGCCAATGAGCACTCCGCATGTGCTGCTAGGTTAGCAGCTGGATTATGTGCTGATCTGGCATCAGAAATTGTTTCTGGACGTGTCAAAAATGGATTTGCTTTGGTTAGGCCTCCTGGTCATCATGCTGGTGTAAGAAATGCGATGGGGTTCTGCCTTCACAATAATGCTGCAGTGGCAGCAATGACAGCTCAGATTTCAGGAGCTAGGAAGGTGCTAATTTTAGATTGGGATGTCCATCATGGAAATGGGACACAGGAAATATTTGAGAATAACCCAAGCGTCTTGTATATATCATTGCATAGACATGAGGGAGGAGCATTCTATCCTGGTACTGGAGCTGCCGTTGAGGTTGGTAGTATGGGGGCAGAAGGGTACTGTGTGAATATTCCGTGGAGTCGAGGAGGAGTGGGTGATAATGATTACAGTTTTGCATTTCAGCATGTTGTCCTTCCTATAGCTTCTGAGTTTGCTCCAGATTTTACCATAATATCAGCTGGATTTGATGCTGCAAGAGGAGATCCCCTAGGATGTTGTGATGTTACACCCACCGGCTATGCACATATGACGCACATGTTAAAGGGCATTTCTGGTGGAAAATTGCTTGTTATTCTTGAGGGGGGCTATAATCTTCGTTCTATATCATCGTCTGCAACTGCAGTAATCAAGGTACTGCTGGGTGAGGATCCAGGACGTGAACTGGAAAATAGTTTCCCTTCCAAAGCTGGCATACAAACTGTACTGGAAGTCCTCAAAATTCAGTTGAATTATTGGCCTTCCTTGGGACCTATATTTTCAAATTTGCAGTCACAGTGGAGAATGTACTGTCTTGGGAAAAAAAGAAAACAGATCAAGAAGAGACGCCGAATTCTGGCCCCAAAGTGGTGGAGGCTGGGGCGAAAAAGTTTCTTATTCCATTACCTGAACGGCCATTATCTTGGTGGAAAGTCAAATTGA 1698 0.4482 MSHTTSRKPQNGHHKQDDSPSADGSVGKGENSLSDAAAAVADSDTLQPEAKKRARVQKELTFQDICQNQDIFDDDDEDDIDWEPVPVPLEEVVEVTKWVCKNCTGISLSHYDCCMICGEHKDSKIVSRGFFASPFAQDDDSAVVQSNAKDVSSQESAANSSTAIGFDERMLLHEEADKKSHPHPERPDRLRAIAASLARAGIFPGRCYPIPAREITRKELTTVHSLEHIDSVEVTSSLLSSYFTADTYANEHSACAARLAAGLCADLASEIVSGRVKNGFALVRPPGHHAGVRNAMGFCLHNNAAVAAMTAQISGARKVLILDWDVHHGNGTQEIFENNPSVLYISLHRHEGGAFYPGTGAAVEVGSMGAEGYCVNIPWSRGGVGDNDYSFAFQHVVLPIASEFAPDFTIISAGFDAARGDPLGCCDVTPTGYAHMTHMLKGISGGKLLVILEGGYNLRSISSSATAVIKVLLGEDPGRELENSFPSKAGIQTVLEVLKIQLNYWPSLGPIFSNLQSQWRMYCLGKKRKQIKKRRRILAPKWWRLGRKSFLFHYLNGHYLGGKSN* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g2003 565 CDD HDAC_classII 183 473 - -
Lja4g2003 565 Pfam Histone deacetylase domain 183 471 IPR023801 -
Lja4g2003 565 Gene3D Histone deacetylase domain 159 511 IPR037138 -
Lja4g2003 565 PRINTS Histone deacetylase superfamily signature 406 416 IPR000286 -
Lja4g2003 565 PRINTS Histone deacetylase superfamily signature 318 333 IPR000286 -
Lja4g2003 565 PRINTS Histone deacetylase superfamily signature 285 308 IPR000286 -
Lja4g2003 565 MobiDBLite consensus disorder prediction 1 54 - -
Lja4g2003 565 SUPERFAMILY Arginase/deacetylase 159 507 IPR023696 -
Lja4g2003 565 PANTHER HISTONE DEACETYLASE-RELATED 39 558 - -
Lja4g2003 565 PANTHER HISTONE DEACETYLASE 39 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g2003 Lja-Chr4 20699182 20710730 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g2003 - - lja:Lj4g3v1787130.1 969.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g2003 4 20699182 20710730 Lja4g2003 4 20699182 20710730 ECH