Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1441 ATGGAGGAAGTTAACGTGGTGGAAACCAAGGATGGAACTGTTTCAGTGGCTACTGCTTTTGCTGGTCACCAGGAAGCTGTGCAGGATAGAGACCACAAATTTTTAGGAAAAGCGGTTGAAGAAGCATACAAAGGGGTAGATTGTGGACATGGAGGCCCTTTTGGTGCTGTAATTGTTCGTAATGACGAAGTAGTTGTTAGTTGTCACAACATGGTTCTGAATCACACTGACCCTACTGCTCATGCAGAGGTGACAGCAATAAGAGAGGCCTGTAAGAAGCTTAACCAGATAGAGCTTTCAGATTGTGAAATATATGCTTCTTGTGAACCTTGCCCCATGTGCTTTGGTGCAATCCACCTTTCTCGAATTAAGAGGTTGGTTTATGGAGCGAAGGCTGAGGCAGCAATTGCTATTGGGTTTGATGATTTTATTGCGGATGCATTGCGAGGTACTGGATTCTATCAGAAAGCTCAGTTGGAGATTAAAAGAGCTGATGGTAATGGGGCCCTCATTGCAGAAGAGGTTTTCCAGAAAACAAAGGAAAAGTTCCAAATGTACTAG 561 0.4385 MEEVNVVETKDGTVSVATAFAGHQEAVQDRDHKFLGKAVEEAYKGVDCGHGGPFGAVIVRNDEVVVSCHNMVLNHTDPTAHAEVTAIREACKKLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIKRADGNGALIAEEVFQKTKEKFQMY* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1441 186 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 30 129 IPR002125 -
Lja4g1441 186 PANTHER CYTIDINE/DEOXYCYTIDYLATE DEAMINASE FAMILY PROTEIN 1 185 - -
Lja4g1441 186 ProSitePatterns Cytidine and deoxycytidylate deaminases zinc-binding region signature. 81 118 IPR016192 GO:0008270|GO:0016787
Lja4g1441 186 Gene3D Cytidine Deaminase, domain 2 30 186 - -
Lja4g1441 186 SUPERFAMILY Cytidine deaminase-like 24 144 IPR016193 GO:0003824
Lja4g1441 186 CDD nucleoside_deaminase 35 142 - -
Lja4g1441 186 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 29 143 IPR002125 -
Lja4g1441 186 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 1 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1441 Lja-Chr4 13197296 13200065 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1441 - - cam:101506670 350.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1441 4 13197296 13200065 Lja6g1936 6 47123460 47125372 PCT