Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1393 ATGACGCCGGTGTCACTCTTCCTCGTCGCCACCAAGCTCGCCGGAGCTCTCGCCACTCTCTCCGTCGCCGCCAATGCCTTCTCTTACTCTCGTTTCCGCAACAAGAATCTCCGCCCATTCCGCTCCCCTATCGATGAATCCTCCGACCCTCTCGCACTCTTCGACATTTCAGAGGGAGAATCAGAAAATGGGTTTTTCTTTGGTTTGGCTACGGCACCGGCACATGTTGAGGACAAGCTTGATGATGCTTGGATACAGTTTGCTGAACAAACGAGTGTTGTTGAGCCCAAGCAGGAAGTGGATGCCTTGATGGGCTCTGCTGCTGGTGATGGTGGCGTTCAAGGAGCTGCATCGTCTCCAAGGCAAGCTCATGACAAGGCCAAGAAGCCTCTTAAGGTTGCCATGGAGGCCATGATTAGAGGATTTCAGAAGTACATGGAAATGGAAGTAGAGGGTCATGAAGAACAAGAAAAAGAACAGCCTAATGTAACTTCTTGGCATAATGTTCCACACCCGGAGGAGAGGTTAAGGTTTTGGTCTGATCCTGATACAGAACTAAAATTGGCCAAGGATACTGGTGTTACTGTTTTTCGCCTGGGAATAGATTGGTCAAGAATCATGCCAGAGGAGCCAATAAACAGTCTTAAAGAATCTGTTAACTATGCTGCATTGGAGCGTTATAAGTGGATTATCAATAGGGTTCGCTCATATGGGATGAAGGTGATGCTCACTCTTTTTCATCACTCACTTCCACCTTGGGCTGGTGAGTATGGAGGTTGGAAGCTGGAAAAGACAGTGGATTACTTCATGGACTTTACCAGGCTTGTTGTAAACAGTGTATCAGATTTAGTAGACTATTGGGTAACATTTAATGAGCCTCATATCTTCTGTATGCTTACGTATTCTGCCGGAGCTTGGCCTGGTGGTCATCCTGATATGCTGGAGGCTGCTACTTCTGCACTTCCAACTGGTGTTTTCCAGCAGGCCATGCATTGGATGTCTATTGCACACTCAAAGGCATATGATTACATCCATGAACAAAGTAACTCATCAAATCCGAGAGTCGGCGTAGCACATCATGTGTCATTTATGCGACCGTATGGGCTGTTTGATGTTGCTGCTGTTATATTGGCTAATTCATTGACTATCTTCCCATACATTGATGAAATATCTGAAAAGCTGGACTTTATAGGCATAAACTACTATGGGCAGGAGGTGGTCTGTGGTTCTGGCCTGAAGCTGGGGGAAAATGATGAGTATAGTGAATCTGGTCGAGGGGTATATCCTGATGGCTTATATCGGATGTTGCTTCAGTTTCATGAAAGATACAAACATTTAAATGTCCCCTTCATCGTTACTGAAAATGGGGTTTCGGATGAGACAGATTTGATCCGCCGGCCATATCTCCTGGAGCATTTGCTTGCTATTTATGCAGCCATGACCATGGGCGTGCCTGTGCTTGGTTATCTGTTCTGGACTATTTCTGATAACTGGGAGTGGGCTGATGGATATGGTCCCAAGTTTGGACTTGTTGCAGTTGACCGGGCCAATAATCTTGCACGGATTCCCCGTCCTTCGTACCGCCTATTTTCTAAAATTGTGAATACTGGTAAAATTACTCGTGAAGATCGTGAAGCAGCATGGTATGAACTCCAACGAGCTGCTAAAGAGAAGAAAACAAGGCCATTTTATCGGTCTGTGGACAAACATGGTCTAATGTATGCAGGTGGCCTTGATGAGCCTATACAGCGACCTTATATTGAACGAGATTGGCGGTTTGGGCATTATCAGATGGATGGTCTCCAAGATCCCTTGAGCCGTTTCTTAAGATTCACTATTCGATCACTCTCTCTTAAATGGAAAAAGGAACCCCAAAAGAAGAATGTCAAATTAGTTCTCGAGCCTCTTGAACTTAGCAGTTGA 1923 0.4566 MTPVSLFLVATKLAGALATLSVAANAFSYSRFRNKNLRPFRSPIDESSDPLALFDISEGESENGFFFGLATAPAHVEDKLDDAWIQFAEQTSVVEPKQEVDALMGSAAGDGGVQGAASSPRQAHDKAKKPLKVAMEAMIRGFQKYMEMEVEGHEEQEKEQPNVTSWHNVPHPEERLRFWSDPDTELKLAKDTGVTVFRLGIDWSRIMPEEPINSLKESVNYAALERYKWIINRVRSYGMKVMLTLFHHSLPPWAGEYGGWKLEKTVDYFMDFTRLVVNSVSDLVDYWVTFNEPHIFCMLTYSAGAWPGGHPDMLEAATSALPTGVFQQAMHWMSIAHSKAYDYIHEQSNSSNPRVGVAHHVSFMRPYGLFDVAAVILANSLTIFPYIDEISEKLDFIGINYYGQEVVCGSGLKLGENDEYSESGRGVYPDGLYRMLLQFHERYKHLNVPFIVTENGVSDETDLIRRPYLLEHLLAIYAAMTMGVPVLGYLFWTISDNWEWADGYGPKFGLVAVDRANNLARIPRPSYRLFSKIVNTGKITREDREAAWYELQRAAKEKKTRPFYRSVDKHGLMYAGGLDEPIQRPYIERDWRFGHYQMDGLQDPLSRFLRFTIRSLSLKWKKEPQKKNVKLVLEPLELSS* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1393 640 ProSitePatterns Glycosyl hydrolases family 1 active site. 450 458 IPR018120 -
Lja4g1393 640 PANTHER GALACTOLIPID GALACTOSYLTRANSFERASE SFR2, CHLOROPLASTIC 3 595 - -
Lja4g1393 640 Gene3D Glycosidases 141 549 - -
Lja4g1393 640 PANTHER GLYCOSYL HYDROLASE 3 595 IPR001360 GO:0004553|GO:0005975
Lja4g1393 640 MobiDBLite consensus disorder prediction 105 129 - -
Lja4g1393 640 Pfam Glycosyl hydrolase family 1 388 536 IPR001360 GO:0004553|GO:0005975
Lja4g1393 640 Pfam Glycosyl hydrolase family 1 183 367 IPR001360 GO:0004553|GO:0005975
Lja4g1393 640 PRINTS Glycosyl hydrolase family 1 signature 507 519 IPR001360 GO:0004553|GO:0005975
Lja4g1393 640 PRINTS Glycosyl hydrolase family 1 signature 483 500 IPR001360 GO:0004553|GO:0005975
Lja4g1393 640 PRINTS Glycosyl hydrolase family 1 signature 450 458 IPR001360 GO:0004553|GO:0005975
Lja4g1393 640 PRINTS Glycosyl hydrolase family 1 signature 393 407 IPR001360 GO:0004553|GO:0005975
Lja4g1393 640 PRINTS Glycosyl hydrolase family 1 signature 462 473 IPR001360 GO:0004553|GO:0005975
Lja4g1393 640 SUPERFAMILY (Trans)glycosidases 151 542 IPR017853 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1393 4 610 Glycoside Hydrolase AT3G06510 63.863 0.0 842
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1393 K21362 - gmx:732645 1071.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1393 4 12461620 12466791 Lja4g1393 4 12461620 12466791 ECH