Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1379 ATGGCGAAACACGAGGAGCTTCCGATCCCGATTTACGAGAACCTCGAAGGTGTTTACGGCGATGGTTCATCGCTCGAAGAAGCTCAGCTTCGTTTCGACAATTTGAAGTCCAAATTCATCCAATTCTTCGCTCACCCTCCTCAACTCTTCGCTCGTTCACCAGGGAGAGTGAACTTGATCGGAGAGCATATAGACTATGAGGGTTATTCGGTTTTGCCTATGGCTATTCGCCAAGATACAATCATCGCGATTCGGAAGAATGAAGCCGAGCCTGTTCTTAGGATCGCTAATGTTAATGATGAGAAATATGACATTTGTACTTATCCTGCTGATCCTAACCAGGAACTTGACTTGAAGAATCACAAATGGGGCCATTACTTTATTTGTGGGTACAAAGGTTTTCATGACTATGCAAAACTGCAAGGAGTGGATGTTGGTCCACCTGTTGGGCTTGATGTTGTTGTTGATGGGACCGTGCCTACAGGTTCCGGACTATCAAGCTCTGCGGCGTTTGTTTGTTCTTCTACAATTGCTATTATGGCTGCTTTTGATGTGAACTTCCCAAAGAAAGAAATTGCACAAGTCACATGTGACTGTGAACGACATATTGGGACACAATCTGGTGGGATGGATCAGGCAATCTCTGTCATGGCCAAGACTGGGTTTGCAGAATTGATTGATTTCAACCCAATTCGTGCAACGGATGTGCAACTGCCTGCTGGTGGGACTTTTGTGATAGCTCATTCTTTGGCGGAGTCTCAGAAGGCTGTTACCGCTGCCACTAATTATAATAATAGGGTTGTTGAATGCCATTTGGCTTCTATTGTGCTTGCTATAAAGCTAGGAATGGAACCAGAAGAAGCAATATCAAAAGTGAAAACACTATCCGACGTTGAAGGGTTGTGTGTAGCATTTGCTGGTACTCAGAACTCATCGGATCCTGTACTTGCCGTGAAGGAATATCTGAAAGAAGAACCATATACAGCTGAAGAAATTGAAGAAGTTACTGGCCAAAAGTTAACTTCATTTTTGAACATTAATGCATCTTATTTGGCAGTCATACAAGCTGCAAAGCAATACAAATTACATCAGAGAGCTGCGCACGTGTATTCAGAAGCCAGGAGAGTACATGCTTTCAAGGATGTTGTATCATCAAATCTAAGTGACGAGGAGAAGCTAATGAAACTCGGTGACCTTATGAACGAGAGTCATTATAGCTGCAGTGTTTTATATGAATGCAGCTGTCCGGAGTTGGAAGAACTTGTAAATATTTGCCGTGACAACGGTGCTCTCGGAGCAAGGCTTACCGGCGCCGGGTGGGGCGGTTGTGCTGTTGCTTTGGTGAAAGAGAGCATAGTCCCACAATTTATCCTTAATTTGAAGGAAGGTTTCTACCAATCTAGGATGGACAAGGGCGTTATTAAGAAGAACGATCTTGGCCTTTATGTATTTGCTTCCAAGCCATCAAGTGGTGCTGCTATCATCAAGTTTTAG 1494 0.4378 MAKHEELPIPIYENLEGVYGDGSSLEEAQLRFDNLKSKFIQFFAHPPQLFARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIIAIRKNEAEPVLRIANVNDEKYDICTYPADPNQELDLKNHKWGHYFICGYKGFHDYAKLQGVDVGPPVGLDVVVDGTVPTGSGLSSSAAFVCSSTIAIMAAFDVNFPKKEIAQVTCDCERHIGTQSGGMDQAISVMAKTGFAELIDFNPIRATDVQLPAGGTFVIAHSLAESQKAVTAATNYNNRVVECHLASIVLAIKLGMEPEEAISKVKTLSDVEGLCVAFAGTQNSSDPVLAVKEYLKEEPYTAEEIEEVTGQKLTSFLNINASYLAVIQAAKQYKLHQRAAHVYSEARRVHAFKDVVSSNLSDEEKLMKLGDLMNESHYSCSVLYECSCPELEELVNICRDNGALGARLTGAGWGGCAVALVKESIVPQFILNLKEGFYQSRMDKGVIKKNDLGLYVFASKPSSGAAIIKF* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1379 497 ProSitePatterns Galactokinase signature. 55 66 IPR019741 -
Lja4g1379 497 PIRSF Galactokinase 23 497 IPR006206 GO:0005524|GO:0005737|GO:0016301|GO:0016773
Lja4g1379 497 Gene3D - 237 466 - -
Lja4g1379 497 Pfam GHMP kinases C terminal 394 465 IPR013750 -
Lja4g1379 497 PRINTS Mevalonate kinase family signature 199 218 - -
Lja4g1379 497 PRINTS Mevalonate kinase family signature 432 449 - -
Lja4g1379 497 PRINTS Mevalonate kinase family signature 53 77 - -
Lja4g1379 497 PRINTS Mevalonate kinase family signature 157 179 - -
Lja4g1379 497 PANTHER MEVALONATE KINASE/GALACTOKINASE 1 495 - -
Lja4g1379 497 ProSitePatterns GHMP kinases putative ATP-binding domain. 159 170 IPR006203 GO:0005524
Lja4g1379 497 PANTHER BNAA01G32760D PROTEIN 1 495 - -
Lja4g1379 497 Pfam GHMP kinases N terminal domain 152 217 IPR006204 GO:0005524
Lja4g1379 497 SUPERFAMILY Ribosomal protein S5 domain 2-like 27 240 IPR020568 -
Lja4g1379 497 PRINTS Galactokinase signature 150 168 IPR000705 GO:0004335|GO:0005524|GO:0006012|GO:0046835
Lja4g1379 497 PRINTS Galactokinase signature 364 378 IPR000705 GO:0004335|GO:0005524|GO:0006012|GO:0046835
Lja4g1379 497 PRINTS Galactokinase signature 55 73 IPR000705 GO:0004335|GO:0005524|GO:0006012|GO:0046835
Lja4g1379 497 TIGRFAM gal_kin: galactokinase 34 469 IPR000705 GO:0004335|GO:0005524|GO:0006012|GO:0046835
Lja4g1379 497 Pfam Galactokinase galactose-binding signature 38 86 IPR019539 -
Lja4g1379 497 Gene3D - 262 412 - -
Lja4g1379 497 Gene3D - 37 236 IPR014721 -
Lja4g1379 497 SUPERFAMILY GHMP Kinase, C-terminal domain 243 472 IPR036554 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1379 Lja-Chr4 12340653 12346716 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1379 K18674 - gmx:100803230 883.634
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1379 4 12340653 12346716 Lja4g1379 4 12340653 12346716 ECH