Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1355 ATGAAGGTGCTCTCACAGCTTCCTCCTCCATCTTCTTCACACAACTTCACTCTCTTCACTCAAACCAACAACTTCAAATTCACACTCAAAGTACCCATTTTACCCCTCCACTCCTCCTCCTCCCATCTCACCGCACCGGCACCATGTTGCTCTCTCCGCGACTCATCAACCACCACCACCACCGTGCTGGACAAAAATACCCTTCCCTCCGAACAGACTTCCCGCAATGACGCTCCGCCGAAAGACTCTAACGGCGCGCTAGTGGTTCGCCGGCCGGTGATGGAGATCTCCGGCGAGGTGAAGGAGGCAGATGAAGATGAGGATGACACGAAGGGTTCTTCGATTGACGCCGGGCTAACCAGATTCGCGAAGAAGATGCCGTTGTTTGAACCTAAGAGGGTCGAATCGGAGCCTAAAGAGAAACCCCTCACTGTGAATTTGGACTTGGCGTTGTATAAGGCTAAGGTTTTGGGTAGAAAGTTTCGGTATGAAGAAGCAGAGCAAATTCTTCAGAAGTGTATATGCTGTTGGCCAGAAGATGGTAGAGCTTATGTGGCACTTGGGAAGATTTTGAGCAAGCAATCCAAAACAAGTCAAGCCAGAGAGGTATATGAACAGGGTTGCCAAGCTACTCAGGGTGAAAATGCTTACATTTGGCAGTGCTGGGCAGTTCTTGAAAAGAAAATGGGAAATATCAGGAAAGCAAGAGAGCTTTTTGATGCTGCCACGGTAGCTGATAAGAGGCATGTTGCAGCTTGGCACGGATGGGCAGTTCTAGAGTTGAAACAGGGAAATATAACGAAGGCTAGGAATCTGCTTTCCAAAGGTCTTAAGTATTGTGGACAGAATGAGTACATATACCAAACTCTTGCTTTGCTTGAAGTTAGAGCAAATAGATTTCAGCAGGCTCGATACTTATTTAATCAGGCCACTAAGTGTAATCCTAACAGCTGTGCTAGTTGGCTTGCTTGGGCACAAATGGAAGTGGGACAGGAAAACTATCGTACTGCTAGGAAATTATTTGAGAGAGCAGTGCAAGCAAGTCCTAAAAATAGGTTTGCTTGGCATGTATGGGGCATTTTTGAAGCTAATGTGGGCAACATTATTAAGGGAAGAAAACTTCTAAAGATTGGCCATGCGCTGAATCCAAGAGATCCCGTTCTCCTCCAGTCTCTTGCATTACTGGAATACAATCACTCGAGTGCAAACCTTGCTCGGATTTTGTTCAGGAGAGCTTCTGAATTAGACCCGAAACATCAACCTGTTTGGTTTGCTTGGGGTTGGATGGAATGGAAAGAAGGAAACTTGAATACAGCTAGAGAACTATACCAGAAAGCCTTATCGATTAATTCAAACAGTGAAAGTGCTGCCAGGTGTCTCCAGGCATGGGGTGTTCTGGAGCAGAGGGTTGGCAATCTTTCAGCTGCTCGTAGATTATTTAGATCCTCGTTGAATATAAATTCTCAGAGTTATGTGACATGGATGACATGGGCTTCACTGGAGGAAGATCAAGGAAATTCTGTGCGTGCTGAAGAGATTCGTAACCTTTATTTCCAGCAGCGCACGGAGGTTGTGGATGATGCTTCATGGGTTATGGGATTCTTAGATATTCTAGACCCTGCGATTGACACTTTGAAGAGACTCCTGAAGCTGGACTCAAATGCTTACACCACGCCGCTTGATTCTCTGAGAAATATTGCCGGAAAAAATCGAAACAAGGCTGATTTTTCTAGTGGCGAGGATGGTGAAAGTGACTTTGACTTGGATGCTTTCATTATGGACAGATTATCTTTTGATTCGTCCAATCTAGAAGTTCAGTTGGGAACACCAAAAATGCCTTCTGTGAAAAGATATTCGTCTCCAAGAAGGATATGGAAGAAGGATATGGCCATCAAATGA 1899 0.4529 MKVLSQLPPPSSSHNFTLFTQTNNFKFTLKVPILPLHSSSSHLTAPAPCCSLRDSSTTTTTVLDKNTLPSEQTSRNDAPPKDSNGALVVRRPVMEISGEVKEADEDEDDTKGSSIDAGLTRFAKKMPLFEPKRVESEPKEKPLTVNLDLALYKAKVLGRKFRYEEAEQILQKCICCWPEDGRAYVALGKILSKQSKTSQAREVYEQGCQATQGENAYIWQCWAVLEKKMGNIRKARELFDAATVADKRHVAAWHGWAVLELKQGNITKARNLLSKGLKYCGQNEYIYQTLALLEVRANRFQQARYLFNQATKCNPNSCASWLAWAQMEVGQENYRTARKLFERAVQASPKNRFAWHVWGIFEANVGNIIKGRKLLKIGHALNPRDPVLLQSLALLEYNHSSANLARILFRRASELDPKHQPVWFAWGWMEWKEGNLNTARELYQKALSINSNSESAARCLQAWGVLEQRVGNLSAARRLFRSSLNINSQSYVTWMTWASLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWVMGFLDILDPAIDTLKRLLKLDSNAYTTPLDSLRNIAGKNRNKADFSSGEDGESDFDLDAFIMDRLSFDSSNLEVQLGTPKMPSVKRYSSPRRIWKKDMAIK* 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1355 632 Gene3D Tetratricopeptide repeat domain 147 396 IPR011990 GO:0005515
Lja4g1355 632 PANTHER PROTEIN HIGH CHLOROPHYLL FLUORESCENT 107 21 628 IPR044624 GO:0003729|GO:0006397
Lja4g1355 632 Pfam Tetratricopeptide repeat 290 350 - -
Lja4g1355 632 ProSiteProfiles TPR repeat profile. 420 453 IPR019734 GO:0005515
Lja4g1355 632 SUPERFAMILY TPR-like 349 554 IPR011990 GO:0005515
Lja4g1355 632 SUPERFAMILY TPR-like 161 397 IPR011990 GO:0005515
Lja4g1355 632 SMART hat_new_1 298 330 IPR003107 GO:0006396
Lja4g1355 632 SMART hat_new_1 400 432 IPR003107 GO:0006396
Lja4g1355 632 SMART hat_new_1 264 296 IPR003107 GO:0006396
Lja4g1355 632 SMART hat_new_1 366 398 IPR003107 GO:0006396
Lja4g1355 632 SMART hat_new_1 471 503 IPR003107 GO:0006396
Lja4g1355 632 SMART hat_new_1 195 228 IPR003107 GO:0006396
Lja4g1355 632 SMART hat_new_1 332 364 IPR003107 GO:0006396
Lja4g1355 632 SMART hat_new_1 230 262 IPR003107 GO:0006396
Lja4g1355 632 SMART hat_new_1 434 469 IPR003107 GO:0006396
Lja4g1355 632 SMART tpr_5 386 419 IPR019734 GO:0005515
Lja4g1355 632 SMART tpr_5 318 351 IPR019734 GO:0005515
Lja4g1355 632 SMART tpr_5 216 249 IPR019734 GO:0005515
Lja4g1355 632 SMART tpr_5 284 317 IPR019734 GO:0005515
Lja4g1355 632 SMART tpr_5 420 453 IPR019734 GO:0005515
Lja4g1355 632 SMART tpr_5 250 283 IPR019734 GO:0005515
Lja4g1355 632 SMART tpr_5 181 214 IPR019734 GO:0005515
Lja4g1355 632 SMART tpr_5 457 490 IPR019734 GO:0005515
Lja4g1355 632 SMART tpr_5 147 180 IPR019734 GO:0005515
Lja4g1355 632 ProSiteProfiles TPR repeat profile. 284 317 IPR019734 GO:0005515
Lja4g1355 632 Pfam Tetratricopeptide repeat 422 452 IPR019734 GO:0005515
Lja4g1355 632 Gene3D Tetratricopeptide repeat domain 400 575 IPR011990 GO:0005515
Lja4g1355 632 ProSiteProfiles TPR repeat profile. 318 351 IPR019734 GO:0005515
Lja4g1355 632 MobiDBLite consensus disorder prediction 60 85 - -
Lja4g1355 632 MobiDBLite consensus disorder prediction 60 80 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g1355 - - mtr:MTR_4g122060 981.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1355 4 12157153 12161507 Lja4g1355 4 12157153 12161507 ECH